接口内容:
BIO封装
BioSQL包
Biopython
»
索引
在 GitHub 上修改
索引
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模
_
__abs__() (Bio.Phylo.PhyloXML.Confidence 方法)
__abstractmethods__(Bio.codonalign.codonseq.CodonSeq 属性)
__abstractmethods__(Bio.motifs.meme.Instance 属性)
__abstractmethods__(Bio.SearchIO.BlastIO.blast_tab.BlastTabIndexer 属性)
__abstractmethods__(Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer 属性)
__abstractmethods__(Bio.SearchIO.BlatIO.BlatPslIndexer 属性)
__abstractmethods__(Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarIndexer 属性)
__abstractmethods__(Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarParser 属性)
__abstractmethods__(Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextIndexer 属性)
__abstractmethods__(Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextParser 属性)
__abstractmethods__(Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarIndexer 属性)
__abstractmethods__(Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarParser 属性)
__abstractmethods__(Bio.SearchIO.FastaIO.FastaM10Indexer 属性)
__abstractmethods__(Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextIndexer 属性)
__abstractmethods__(Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitIndexer 属性)
__abstractmethods__(Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmqueryIndexer 属性)
__abstractmethods__(Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabIndexer 属性)
__abstractmethods__(Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextIndexer 属性)
__abstractmethods__(Bio.Seq.MutableSeq 属性)
__abstractmethods__(Bio.Seq.Seq 属性)
__abstractmethods__(Bio.Seq.SequenceDataAbstractBaseClass 属性)
__abstractmethods__(Bio.Seq.UnknownSeq 属性)
__abstractmethods__(Bio.SeqIO.AbiIO.AbiIterator 属性)
__abstractmethods__(Bio.SeqIO.FastaIO.FastaIterator 属性)
__abstractmethods__(Bio.SeqIO.FastaIO.FastaTwoLineIterator 属性)
__abstractmethods__(Bio.SeqIO.GckIO.GckIterator 属性)
__abstractmethods__(Bio.SeqIO.IgIO.IgIterator 属性)
__abstractmethods__(Bio.SeqIO.InsdcIO.EmblCdsFeatureIterator 属性)
__abstractmethods__(Bio.SeqIO.InsdcIO.EmblIterator 属性)
__abstractmethods__(Bio.SeqIO.InsdcIO.GenBankCdsFeatureIterator 属性)
__abstractmethods__(Bio.SeqIO.InsdcIO.GenBankIterator 属性)
__abstractmethods__(Bio.SeqIO.InsdcIO.ImgtIterator 属性)
__abstractmethods__(Bio.SeqIO.Interfaces.SequenceIterator 属性)
__abstractmethods__(Bio.SeqIO.NibIO.NibIterator 属性)
__abstractmethods__(Bio.SeqIO.PdbIO.PdbSeqresIterator 属性)
__abstractmethods__(Bio.SeqIO.PirIO.PirIterator 属性)
__abstractmethods__(Bio.SeqIO.QualityIO.FastqPhredIterator 属性)
__abstractmethods__(Bio.SeqIO.QualityIO.QualPhredIterator 属性)
__abstractmethods__(Bio.SeqIO.SeqXmlIO.SeqXmlIterator 属性)
__abstractmethods__(Bio.SeqIO.SffIO.SffIterator 属性)
__abstractmethods__(Bio.SeqIO.SnapGeneIO.SnapGeneIterator 属性)
__abstractmethods__(Bio.SeqIO.TabIO.TabIterator 属性)
__abstractmethods__(Bio.SeqIO.TwoBitIO.TwoBitIterator 属性)
__abstractmethods__(Bio.SeqIO.XdnaIO.XdnaIterator 属性)
__add__() (Bio.Align.MultipleSeqAlignment 方法)
__add__() (Bio.codonalign.codonalignment.CodonAlignment 方法)
__add__() (Bio.PDB.vectors.Vector 方法)
__add__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__add__() (Bio.phenotype.phen_micro.WellRecord 方法)
__add__() (Bio.Phylo.PhyloXML.Confidence 方法)
__add__() (Bio.SCOP.Raf.SeqMap 方法)
__add__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__add__() (Bio.Seq.UnknownSeq 方法)
__add__() (Bio.SeqFeature.CompoundLocation 方法)
__add__() (Bio.SeqFeature.FeatureLocation 方法)
__add__() (Bio.SeqRecord.SeqRecord 方法)
__annotations__(Bio.PDB.internal_coords.IC_Residue 属性)
__array_finalize__() (Bio.Align.substitution_matrices.Array 方法)
__array_prepare__() (Bio.Align.substitution_matrices.Array 方法)
__array_ufunc__() (Bio.Align.substitution_matrices.Array 方法)
__array_wrap__() (Bio.Align.substitution_matrices.Array 方法)
__bool__() (Bio.Phylo.BaseTree.Clade 方法)
__bool__() (Bio.SeqFeature.SeqFeature 方法)
__bool__() (Bio.SeqRecord.SeqRecord 方法)
__bytes__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__bytes__() (Bio.Seq.UnknownSeq 方法)
__call__() (Bio.Application.AbstractCommandline 方法)
__call__() (Bio.pairwise2.affine_penalty 方法)
__call__() (Bio.pairwise2.dictionary_match 方法)
__call__() (Bio.pairwise2.identity_match 方法)
__contains__() (Bio.Align.substitution_matrices.Array 方法)
__contains__() (Bio.Data.CodonTable.AmbiguousForwardTable 方法)
__contains__() (Bio.PDB.AbstractPropertyMap.AbstractPropertyMap 方法)
__contains__() (Bio.PDB.Chain.Chain 方法)
__contains__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__contains__() (Bio.PDB.Entity.Entity 方法)
__contains__() (Bio.PDB.FragmentMapper.FragmentMapper 方法)
__contains__() (Bio.PDB.vectors.Vector 方法)
__contains__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__contains__() (Bio.Phylo.PhyloXML.Events 方法)
__contains__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__contains__() (Bio.SeqFeature.CompoundLocation 方法)
__contains__() (Bio.SeqFeature.FeatureLocation 方法)
__contains__() (Bio.SeqFeature.SeqFeature 方法)
__contains__() (Bio.SeqRecord.SeqRecord 方法)
__contains__() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
__contains__() (BioSQL.BioSeqDatabase.DBServer 方法)
__delitem__() (Bio.PDB.Chain.Chain 方法)
__delitem__() (Bio.PDB.Entity.Entity 方法)
__delitem__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__delitem__() (Bio.Phylo.PhyloXML.Events 方法)
__delitem__() (Bio.Seq.MutableSeq 方法)
__delitem__() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
__delitem__() (BioSQL.BioSeqDatabase.DBServer 方法)
__divmod__() (Bio.Phylo.PhyloXML.Confidence 方法)
__enter__() (Bio.bgzf.BgzfReader 方法)
__enter__() (Bio.bgzf.BgzfWriter 方法)
__eq__() (Bio.Align.PairwiseAlignment 方法)
__eq__() (Bio.Entrez.Parser.NoneElement 方法)
__eq__() (Bio.motifs.jaspar.Motif 方法)
__eq__() (Bio.Pathway.Reaction 方法)
__eq__() (Bio.Pathway.Rep.Graph.Graph 方法)
__eq__() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
__eq__() (Bio.PDB.Atom.Atom 方法)
__eq__() (Bio.PDB.Entity.Entity 方法)
__eq__() (Bio.PDB.internal_coords.AtomKey 方法)
__eq__() (Bio.PDB.internal_coords.Edron 方法)
__eq__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__eq__() (Bio.phenotype.phen_micro.WellRecord 方法)
__eq__() (Bio.Phylo.PhyloXML.Confidence 方法)
__eq__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__eq__() (Bio.SeqFeature.CompoundLocation 方法)
__eq__() (Bio.SeqFeature.FeatureLocation 方法)
__eq__() (Bio.SeqFeature.Reference 方法)
__eq__() (Bio.SeqRecord.SeqRecord 方法)
__exit__() (Bio.bgzf.BgzfReader 方法)
__exit__() (Bio.bgzf.BgzfWriter 方法)
__float__() (Bio.Phylo.PhyloXML.Confidence 方法)
__floordiv__() (Bio.Phylo.PhyloXML.Confidence 方法)
__format__() (Bio.Align.MultipleSeqAlignment 方法)
__format__() (Bio.Align.PairwiseAlignment 方法)
__format__() (Bio.Align.substitution_matrices.Array 方法)
__format__() (Bio.motifs.Motif 方法)
__format__() (Bio.Phylo.BaseTree.Tree 方法)
__format__() (Bio.SeqRecord.SeqRecord 方法)
__ge__() (Bio.Align.PairwiseAlignment 方法)
__ge__() (Bio.PDB.Atom.Atom 方法)
__ge__() (Bio.PDB.Chain.Chain 方法)
__ge__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__ge__() (Bio.PDB.Entity.Entity 方法)
__ge__() (Bio.PDB.internal_coords.AtomKey 方法)
__ge__() (Bio.PDB.internal_coords.Edron 方法)
__ge__() (Bio.Phylo.PhyloXML.Confidence 方法)
__ge__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__ge__() (Bio.SeqRecord.SeqRecord 方法)
__getattr__() (Bio.Data.CodonTable.AmbiguousCodonTable 方法)
__getattr__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__getitem__() (Bio.Align.AlignInfo.PSSM 方法)
__getitem__() (Bio.Align.MultipleSeqAlignment 方法)
__getitem__() (Bio.Align.PairwiseAlignment 方法)
__getitem__() (Bio.Align.PairwiseAlignments 方法)
__getitem__() (Bio.Align.substitution_matrices.Array 方法)
__getitem__() (Bio.codonalign.codonalignment.CodonAlignment 方法)
__getitem__() (Bio.Data.CodonTable.AmbiguousForwardTable 方法)
__getitem__() (Bio.motifs.mast.Record 方法)
__getitem__() (Bio.motifs.matrix.GenericPositionMatrix 方法)
__getitem__() (Bio.motifs.meme.Record 方法)
__getitem__() (Bio.motifs.minimal.Record 方法)
__getitem__() (Bio.Nexus.StandardData.StandardData 方法)
__getitem__() (Bio.PDB.AbstractPropertyMap.AbstractPropertyMap 方法)
__getitem__() (Bio.PDB.Chain.Chain 方法)
__getitem__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__getitem__() (Bio.PDB.Entity.Entity 方法)
__getitem__() (Bio.PDB.FragmentMapper.FragmentMapper 方法)
__getitem__() (Bio.PDB.vectors.Vector 方法)
__getitem__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__getitem__() (Bio.phenotype.phen_micro.WellRecord 方法)
__getitem__() (Bio.Phylo.BaseTree.Clade 方法)
__getitem__() (Bio.Phylo.PhyloXML.Events 方法)
__getitem__() (Bio.Phylo.PhyloXML.Phyloxml 方法)
__getitem__() (Bio.SCOP.Cla.Index 方法)
__getitem__() (Bio.SCOP.Raf.SeqMap 方法)
__getitem__() (Bio.SCOP.Raf.SeqMapIndex 方法)
__getitem__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__getitem__() (Bio.Seq.UnknownSeq 方法)
__getitem__() (Bio.SeqIO.TwoBitIO.TwoBitIterator 方法)
__getitem__() (Bio.SeqRecord.SeqRecord 方法)
__getitem__() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
__getitem__() (BioSQL.BioSeqDatabase.DBServer 方法)
__getnewargs__() (Bio.PDB.internal_coords.AtomKey.fieldsDef 方法)
__getnewargs__() (Bio.SeqFeature.BetweenPosition 方法)
__getnewargs__() (Bio.SeqFeature.OneOfPosition 方法)
__getnewargs__() (Bio.SeqFeature.WithinPosition 方法)
__getstate__() (Bio.Align.PairwiseAligner 方法)
__gt__() (Bio.Align.PairwiseAlignment 方法)
__gt__() (Bio.PDB.Atom.Atom 方法)
__gt__() (Bio.PDB.Chain.Chain 方法)
__gt__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__gt__() (Bio.PDB.Entity.Entity 方法)
__gt__() (Bio.PDB.internal_coords.AtomKey 方法)
__gt__() (Bio.PDB.internal_coords.Edron 方法)
__gt__() (Bio.Phylo.PhyloXML.Confidence 方法)
__gt__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__gt__() (Bio.SeqRecord.SeqRecord 方法)
__hash__() (Bio.motifs.jaspar.Motif 方法)
__hash__() (Bio.Pathway.Interaction 方法)
__hash__() (Bio.Pathway.Reaction 方法)
__hash__() (Bio.PDB.Atom.Atom 方法)
__hash__() (Bio.PDB.Entity.Entity 方法)
__hash__() (Bio.PDB.internal_coords.AtomKey 方法)
__hash__() (Bio.PDB.internal_coords.Edron 方法)
__hash__() (Bio.Phylo.PhyloXML.Confidence 方法)
__hash__() (Bio.Seq.Seq 方法)
__hash__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__hash__() (Bio.SeqFeature.UnknownPosition 方法)
__hash__(Bio.Align.PairwiseAlignment 属性)
__hash__(Bio.Entrez.Parser.NoneElement 属性)
__hash__(Bio.Pathway.Rep.Graph.Graph 属性)
__hash__(Bio.Pathway.Rep.MultiGraph.MultiGraph 属性)
__hash__(Bio.phenotype.phen_micro.PlateRecord 属性)
__hash__(Bio.phenotype.phen_micro.WellRecord 属性)
__hash__(Bio.SeqFeature.CompoundLocation 属性)
__hash__(Bio.SeqFeature.FeatureLocation 属性)
__hash__(Bio.SeqFeature.Reference 属性)
__hash__(Bio.SeqRecord.SeqRecord 属性)
__iadd__() (Bio.SCOP.Raf.SeqMap 方法)
__imul__() (Bio.Seq.UnknownSeq 方法)
__init__() (Bio.Affy.CelFile.ParserError 方法)
__init__() (Bio.Affy.CelFile.Record 方法)
__init__() (Bio.Align.AlignInfo.PSSM 方法)
__init__() (Bio.Align.AlignInfo.SummaryInfo 方法)
__init__() (Bio.Align.Applications.ClustalOmegaCommandline 方法)
__init__() (Bio.Align.Applications.ClustalwCommandline 方法)
__init__() (Bio.Align.Applications.DialignCommandline 方法)
__init__() (Bio.Align.Applications.MafftCommandline 方法)
__init__() (Bio.Align.Applications.MSAProbsCommandline 方法)
__init__() (Bio.Align.Applications.MuscleCommandline 方法)
__init__() (Bio.Align.Applications.PrankCommandline 方法)
__init__() (Bio.Align.Applications.ProbconsCommandline 方法)
__init__() (Bio.Align.Applications.TCoffeeCommandline 方法)
__init__() (Bio.Align.MultipleSeqAlignment 方法)
__init__() (Bio.Align.PairwiseAligner 方法)
__init__() (Bio.Align.PairwiseAlignment 方法)
__init__() (Bio.Align.PairwiseAlignments 方法)
__init__() (Bio.AlignIO.Interfaces.AlignmentIterator 方法)
__init__() (Bio.AlignIO.Interfaces.AlignmentWriter 方法)
__init__() (Bio.AlignIO.Interfaces.SequentialAlignmentWriter 方法)
__init__() (Bio.AlignIO.MafIO.MafIndex 方法)
__init__() (Bio.AlignIO.MauveIO.MauveWriter 方法)
__init__() (Bio.Application.AbstractCommandline 方法)
__init__() (Bio.Application.ApplicationError 方法)
__init__() (Bio.bgzf.BgzfReader 方法)
__init__() (Bio.bgzf.BgzfWriter 方法)
__init__() (Bio.Blast.Applications.NcbiblastformatterCommandline 方法)
__init__() (Bio.Blast.Applications.NcbiblastnCommandline 方法)
__init__() (Bio.Blast.Applications.NcbiblastpCommandline 方法)
__init__() (Bio.Blast.Applications.NcbiblastxCommandline 方法)
__init__() (Bio.Blast.Applications.NcbideltablastCommandline 方法)
__init__() (Bio.Blast.Applications.NcbimakeblastdbCommandline 方法)
__init__() (Bio.Blast.Applications.NcbipsiblastCommandline 方法)
__init__() (Bio.Blast.Applications.NcbirpsblastCommandline 方法)
__init__() (Bio.Blast.Applications.NcbirpstblastnCommandline 方法)
__init__() (Bio.Blast.Applications.NcbitblastnCommandline 方法)
__init__() (Bio.Blast.Applications.NcbitblastxCommandline 方法)
__init__() (Bio.Blast.NCBIXML.BlastParser 方法)
__init__() (Bio.Blast.ParseBlastTable.BlastTableEntry 方法)
__init__() (Bio.Blast.ParseBlastTable.BlastTableReader 方法)
__init__() (Bio.Blast.ParseBlastTable.BlastTableRec 方法)
__init__() (Bio.Blast.Record.Alignment 方法)
__init__() (Bio.Blast.Record.Blast 方法)
__init__() (Bio.Blast.Record.DatabaseReport 方法)
__init__() (Bio.Blast.Record.Description 方法)
__init__() (Bio.Blast.Record.DescriptionExt 方法)
__init__() (Bio.Blast.Record.DescriptionExtItem 方法)
__init__() (Bio.Blast.Record.Header 方法)
__init__() (Bio.Blast.Record.HSP 方法)
__init__() (Bio.Blast.Record.MultipleAlignment 方法)
__init__() (Bio.Blast.Record.Parameters 方法)
__init__() (Bio.Blast.Record.PSIBlast 方法)
__init__() (Bio.Blast.Record.Round 方法)
__init__() (Bio.CAPS.CAPSMap 方法)
__init__() (Bio.CAPS.DifferentialCutsite 方法)
__init__() (Bio.Cluster.Record 方法)
__init__() (Bio.codonalign.codonalignment.CodonAlignment 方法)
__init__() (Bio.codonalign.codonseq.CodonSeq 方法)
__init__() (Bio.Compass.Record 方法)
__init__() (Bio.Data.CodonTable.AmbiguousCodonTable 方法)
__init__() (Bio.Data.CodonTable.AmbiguousForwardTable 方法)
__init__() (Bio.Data.CodonTable.CodonTable 方法)
__init__() (Bio.Data.CodonTable.NCBICodonTable 方法)
__init__() (Bio.Emboss.Applications.DiffseqCommandline 方法)
__init__() (Bio.Emboss.Applications.EInvertedCommandline 方法)
__init__() (Bio.Emboss.Applications.Est2GenomeCommandline 方法)
__init__() (Bio.Emboss.Applications.ETandemCommandline 方法)
__init__() (Bio.Emboss.Applications.FConsenseCommandline 方法)
__init__() (Bio.Emboss.Applications.FDNADistCommandline 方法)
__init__() (Bio.Emboss.Applications.FDNAParsCommandline 方法)
__init__() (Bio.Emboss.Applications.FNeighborCommandline 方法)
__init__() (Bio.Emboss.Applications.FProtDistCommandline 方法)
__init__() (Bio.Emboss.Applications.FProtParsCommandline 方法)
__init__() (Bio.Emboss.Applications.FSeqBootCommandline 方法)
__init__() (Bio.Emboss.Applications.FTreeDistCommandline 方法)
__init__() (Bio.Emboss.Applications.FuzznucCommandline 方法)
__init__() (Bio.Emboss.Applications.FuzzproCommandline 方法)
__init__() (Bio.Emboss.Applications.IepCommandline 方法)
__init__() (Bio.Emboss.Applications.NeedleallCommandline 方法)
__init__() (Bio.Emboss.Applications.NeedleCommandline 方法)
__init__() (Bio.Emboss.Applications.PalindromeCommandline 方法)
__init__() (Bio.Emboss.Applications.Primer3Commandline 方法)
__init__() (Bio.Emboss.Applications.PrimerSearchCommandline 方法)
__init__() (Bio.Emboss.Applications.SeqmatchallCommandline 方法)
__init__() (Bio.Emboss.Applications.SeqretCommandline 方法)
__init__() (Bio.Emboss.Applications.StretcherCommandline 方法)
__init__() (Bio.Emboss.Applications.TranalignCommandline 方法)
__init__() (Bio.Emboss.Applications.WaterCommandline 方法)
__init__() (Bio.Emboss.Primer3.Primers 方法)
__init__() (Bio.Emboss.Primer3.Record 方法)
__init__() (Bio.Emboss.PrimerSearch.Amplifier 方法)
__init__() (Bio.Emboss.PrimerSearch.InputRecord 方法)
__init__() (Bio.Emboss.PrimerSearch.OutputRecord 方法)
__init__() (Bio.Entrez.Parser.CorruptedXMLError 方法)
__init__() (Bio.Entrez.Parser.DataHandler 方法)
__init__() (Bio.Entrez.Parser.DataHandlerMeta 方法)
__init__() (Bio.Entrez.Parser.DictionaryElement 方法)
__init__() (Bio.Entrez.Parser.ListElement 方法)
__init__() (Bio.Entrez.Parser.NoneElement 方法)
__init__() (Bio.Entrez.Parser.NotXMLError 方法)
__init__() (Bio.Entrez.Parser.ValidationError 方法)
__init__() (Bio.ExPASy.cellosaurus.Record 方法)
__init__() (Bio.ExPASy.Enzyme.Record 方法)
__init__() (Bio.ExPASy.Prodoc.Record 方法)
__init__() (Bio.ExPASy.Prodoc.Reference 方法)
__init__() (Bio.ExPASy.Prosite.Record 方法)
__init__() (Bio.ExPASy.ScanProsite.ContentHandler 方法)
__init__() (Bio.ExPASy.ScanProsite.Parser 方法)
__init__() (Bio.ExPASy.ScanProsite.Record 方法)
__init__() (Bio.GenBank.FeatureParser 方法)
__init__() (Bio.GenBank.Iterator 方法)
__init__() (Bio.GenBank.Record.Feature 方法)
__init__() (Bio.GenBank.Record.Qualifier 方法)
__init__() (Bio.GenBank.Record.Record 方法)
__init__() (Bio.GenBank.Record.Reference 方法)
__init__() (Bio.GenBank.RecordParser 方法)
__init__() (Bio.GenBank.Scanner.InsdcScanner 方法)
__init__() (Bio.GenBank.utils.FeatureValueCleaner 方法)
__init__() (Bio.Geo.Record.Record 方法)
__init__() (Bio.HMM.DynamicProgramming.AbstractDPAlgorithms 方法)
__init__() (Bio.HMM.DynamicProgramming.LogDPAlgorithms 方法)
__init__() (Bio.HMM.DynamicProgramming.ScaledDPAlgorithms 方法)
__init__() (Bio.HMM.MarkovModel.HiddenMarkovModel 方法)
__init__() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
__init__() (Bio.HMM.Trainer.AbstractTrainer 方法)
__init__() (Bio.HMM.Trainer.BaumWelchTrainer 方法)
__init__() (Bio.HMM.Trainer.KnownStateTrainer 方法)
__init__() (Bio.HMM.Trainer.TrainingSequence 方法)
__init__() (Bio.KEGG.Compound.Record 方法)
__init__() (Bio.KEGG.Enzyme.Record 方法)
__init__() (Bio.KEGG.Gene.Record 方法)
__init__() (Bio.KEGG.KGML.KGML_parser.KGMLParser 方法)
__init__() (Bio.KEGG.KGML.KGML_pathway.Component 方法)
__init__() (Bio.KEGG.KGML.KGML_pathway.Entry 方法)
__init__() (Bio.KEGG.KGML.KGML_pathway.Graphics 方法)
__init__() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
__init__() (Bio.KEGG.KGML.KGML_pathway.Reaction 方法)
__init__() (Bio.KEGG.KGML.KGML_pathway.Relation 方法)
__init__() (Bio.kNN.kNN 方法)
__init__() (Bio.LogisticRegression.LogisticRegression 方法)
__init__() (Bio.MarkovModel.MarkovModel 方法)
__init__() (Bio.MaxEntropy.MaxEntropy 方法)
__init__() (Bio.motifs.alignace.Record 方法)
__init__() (Bio.motifs.Instances 方法)
__init__() (Bio.motifs.jaspar.db.JASPAR5 方法)
__init__() (Bio.motifs.jaspar.Motif 方法)
__init__() (Bio.motifs.jaspar.Record 方法)
__init__() (Bio.motifs.mast.Record 方法)
__init__() (Bio.motifs.matrix.GenericPositionMatrix 方法)
__init__() (Bio.motifs.matrix.PositionWeightMatrix 方法)
__init__() (Bio.motifs.meme.Instance 方法)
__init__() (Bio.motifs.meme.Motif 方法)
__init__() (Bio.motifs.meme.Record 方法)
__init__() (Bio.motifs.minimal.Record 方法)
__init__() (Bio.motifs.Motif 方法)
__init__() (Bio.motifs.thresholds.ScoreDistribution 方法)
__init__() (Bio.motifs.transfac.Record 方法)
__init__() (Bio.motifs.xms.XMSScanner 方法)
__init__() (Bio.NaiveBayes.NaiveBayes 方法)
__init__() (Bio.Nexus.Nexus.Block 方法)
__init__() (Bio.Nexus.Nexus.CharBuffer 方法)
__init__() (Bio.Nexus.Nexus.Commandline 方法)
__init__() (Bio.Nexus.Nexus.Nexus 方法)
__init__() (Bio.Nexus.Nexus.StepMatrix 方法)
__init__() (Bio.Nexus.Nodes.Chain 方法)
__init__() (Bio.Nexus.Nodes.Node 方法)
__init__() (Bio.Nexus.StandardData.StandardData 方法)
__init__() (Bio.Nexus.Trees.NodeData 方法)
__init__() (Bio.Nexus.Trees.Tree 方法)
__init__() (Bio.NMR.xpktools.Peaklist 方法)
__init__() (Bio.NMR.xpktools.XpkEntry 方法)
__init__() (Bio.pairwise2.affine_penalty 方法)
__init__() (Bio.pairwise2.dictionary_match 方法)
__init__() (Bio.pairwise2.identity_match 方法)
__init__() (Bio.Pathway.Network 方法)
__init__() (Bio.Pathway.Reaction 方法)
__init__() (Bio.Pathway.Rep.Graph.Graph 方法)
__init__() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
__init__() (Bio.Pathway.System 方法)
__init__() (Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap 方法)
__init__() (Bio.PDB.AbstractPropertyMap.AbstractPropertyMap 方法)
__init__() (Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap 方法)
__init__() (Bio.PDB.Atom.Atom 方法)
__init__() (Bio.PDB.Atom.DisorderedAtom 方法)
__init__() (Bio.PDB.Chain.Chain 方法)
__init__() (Bio.PDB.Dice.ChainSelector 方法)
__init__() (Bio.PDB.DSSP.DSSP 方法)
__init__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__init__() (Bio.PDB.Entity.Entity 方法)
__init__() (Bio.PDB.FragmentMapper.Fragment 方法)
__init__() (Bio.PDB.FragmentMapper.FragmentMapper 方法)
__init__() (Bio.PDB.HSExposure.ExposureCN 方法)
__init__() (Bio.PDB.HSExposure.HSExposureCA 方法)
__init__() (Bio.PDB.HSExposure.HSExposureCB 方法)
__init__() (Bio.PDB.internal_coords.AtomKey 方法)
__init__() (Bio.PDB.internal_coords.Dihedron 方法)
__init__() (Bio.PDB.internal_coords.Edron 方法)
__init__() (Bio.PDB.internal_coords.Hedron 方法)
__init__() (Bio.PDB.internal_coords.IC_Chain 方法)
__init__() (Bio.PDB.internal_coords.IC_Residue 方法)
__init__() (Bio.PDB.MMCIF2Dict.MMCIF2Dict 方法)
__init__() (Bio.PDB.mmcifio.MMCIFIO 方法)
__init__() (Bio.PDB.MMCIFParser.FastMMCIFParser 方法)
__init__() (Bio.PDB.MMCIFParser.MMCIFParser 方法)
__init__() (Bio.PDB.Model.Model 方法)
__init__() (Bio.PDB.NACCESS.NACCESS 方法)
__init__() (Bio.PDB.NACCESS.NACCESS_atomic 方法)
__init__() (Bio.PDB.NeighborSearch.NeighborSearch 方法)
__init__() (Bio.PDB.PDBIO.PDBIO 方法)
__init__() (Bio.PDB.PDBIO.StructureIO 方法)
__init__() (Bio.PDB.PDBList.PDBList 方法)
__init__() (Bio.PDB.PDBParser.PDBParser 方法)
__init__() (Bio.PDB.Polypeptide.CaPPBuilder 方法)
__init__() (Bio.PDB.Polypeptide.PPBuilder 方法)
__init__() (Bio.PDB.PSEA.PSEA 方法)
__init__() (Bio.PDB.QCPSuperimposer.QCPSuperimposer 方法)
__init__() (Bio.PDB.Residue.DisorderedResidue 方法)
__init__() (Bio.PDB.Residue.Residue 方法)
__init__() (Bio.PDB.ResidueDepth.ResidueDepth 方法)
__init__() (Bio.PDB.SASA.ShrakeRupley 方法)
__init__() (Bio.PDB.Structure.Structure 方法)
__init__() (Bio.PDB.StructureAlignment.StructureAlignment 方法)
__init__() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
__init__() (Bio.PDB.Superimposer.Superimposer 方法)
__init__() (Bio.PDB.vectors.Vector 方法)
__init__() (Bio.phenotype.phen_micro.JsonWriter 方法)
__init__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__init__() (Bio.phenotype.phen_micro.WellRecord 方法)
__init__() (Bio.Phylo.Applications.FastTreeCommandline 方法)
__init__() (Bio.Phylo.Applications.PhymlCommandline 方法)
__init__() (Bio.Phylo.Applications.RaxmlCommandline 方法)
__init__() (Bio.Phylo.BaseTree.BranchColor 方法)
__init__() (Bio.Phylo.BaseTree.Clade 方法)
__init__() (Bio.Phylo.BaseTree.Tree 方法)
__init__() (Bio.Phylo.CDAO.Clade 方法)
__init__() (Bio.Phylo.CDAO.Tree 方法)
__init__() (Bio.Phylo.Newick.Clade 方法)
__init__() (Bio.Phylo.Newick.Tree 方法)
__init__() (Bio.Phylo.NewickIO.Parser 方法)
__init__() (Bio.Phylo.NewickIO.Writer 方法)
__init__() (Bio.Phylo.NeXML.Clade 方法)
__init__() (Bio.Phylo.NeXML.Tree 方法)
__init__() (Bio.Phylo.NeXMLIO.Parser 方法)
__init__() (Bio.Phylo.NeXMLIO.Writer 方法)
__init__() (Bio.Phylo.PAML.baseml.Baseml 方法)
__init__() (Bio.Phylo.PAML.codeml.Codeml 方法)
__init__() (Bio.Phylo.PAML.yn00.Yn00 方法)
__init__() (Bio.Phylo.PhyloXML.Accession 方法)
__init__() (Bio.Phylo.PhyloXML.Annotation 方法)
__init__() (Bio.Phylo.PhyloXML.BinaryCharacters 方法)
__init__() (Bio.Phylo.PhyloXML.BranchColor 方法)
__init__() (Bio.Phylo.PhyloXML.Clade 方法)
__init__() (Bio.Phylo.PhyloXML.CladeRelation 方法)
__init__() (Bio.Phylo.PhyloXML.Confidence 方法)
__init__() (Bio.Phylo.PhyloXML.Date 方法)
__init__() (Bio.Phylo.PhyloXML.Distribution 方法)
__init__() (Bio.Phylo.PhyloXML.DomainArchitecture 方法)
__init__() (Bio.Phylo.PhyloXML.Events 方法)
__init__() (Bio.Phylo.PhyloXML.Id 方法)
__init__() (Bio.Phylo.PhyloXML.MolSeq 方法)
__init__() (Bio.Phylo.PhyloXML.Other 方法)
__init__() (Bio.Phylo.PhyloXML.Phylogeny 方法)
__init__() (Bio.Phylo.PhyloXML.Phyloxml 方法)
__init__() (Bio.Phylo.PhyloXML.Point 方法)
__init__() (Bio.Phylo.PhyloXML.Polygon 方法)
__init__() (Bio.Phylo.PhyloXML.Property 方法)
__init__() (Bio.Phylo.PhyloXML.ProteinDomain 方法)
__init__() (Bio.Phylo.PhyloXML.Reference 方法)
__init__() (Bio.Phylo.PhyloXML.Sequence 方法)
__init__() (Bio.Phylo.PhyloXML.SequenceRelation 方法)
__init__() (Bio.Phylo.PhyloXML.Taxonomy 方法)
__init__() (Bio.Phylo.PhyloXML.Uri 方法)
__init__() (Bio.Phylo.PhyloXMLIO.Parser 方法)
__init__() (Bio.Phylo.PhyloXMLIO.Writer 方法)
__init__() (Bio.Phylo.TreeConstruction.DistanceCalculator 方法)
__init__() (Bio.Phylo.TreeConstruction.DistanceMatrix 方法)
__init__() (Bio.Phylo.TreeConstruction.DistanceTreeConstructor 方法)
__init__() (Bio.Phylo.TreeConstruction.NNITreeSearcher 方法)
__init__() (Bio.Phylo.TreeConstruction.ParsimonyScorer 方法)
__init__() (Bio.Phylo.TreeConstruction.ParsimonyTreeConstructor 方法)
__init__() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
__init__() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
__init__() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
__init__() (Bio.PopGen.GenePop.LargeFileParser.Record 方法)
__init__() (Bio.PopGen.GenePop.Record 方法)
__init__() (Bio.SCOP.Astral 方法)
__init__() (Bio.SCOP.Cla.Index 方法)
__init__() (Bio.SCOP.Cla.Record 方法)
__init__() (Bio.SCOP.Des.Record 方法)
__init__() (Bio.SCOP.Dom.Record 方法)
__init__() (Bio.SCOP.Domain 方法)
__init__() (Bio.SCOP.Hie.Record 方法)
__init__() (Bio.SCOP.Node 方法)
__init__() (Bio.SCOP.Raf.Res 方法)
__init__() (Bio.SCOP.Raf.SeqMap 方法)
__init__() (Bio.SCOP.Raf.SeqMapIndex 方法)
__init__() (Bio.SCOP.Residues.Residues 方法)
__init__() (Bio.SCOP.Scop 方法)
__init__() (Bio.SearchIO.BlastIO.blast_tab.BlastTabIndexer 方法)
__init__() (Bio.SearchIO.BlastIO.blast_tab.BlastTabParser 方法)
__init__() (Bio.SearchIO.BlastIO.blast_tab.BlastTabWriter 方法)
__init__() (Bio.SearchIO.BlastIO.blast_text.BlastTextParser 方法)
__init__() (Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer 方法)
__init__() (Bio.SearchIO.BlastIO.blast_xml.BlastXmlParser 方法)
__init__() (Bio.SearchIO.BlastIO.blast_xml.BlastXmlWriter 方法)
__init__() (Bio.SearchIO.BlatIO.BlatPslIndexer 方法)
__init__() (Bio.SearchIO.BlatIO.BlatPslParser 方法)
__init__() (Bio.SearchIO.BlatIO.BlatPslWriter 方法)
__init__() (Bio.SearchIO.FastaIO.FastaM10Indexer 方法)
__init__() (Bio.SearchIO.FastaIO.FastaM10Parser 方法)
__init__() (Bio.SearchIO.HHsuiteIO.hhsuite2_text.Hhsuite2TextParser 方法)
__init__() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
__init__() (Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitWriter 方法)
__init__() (Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabParser 方法)
__init__() (Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabWriter 方法)
__init__() (Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextParser 方法)
__init__() (Bio.SearchIO.InterproscanIO.interproscan_xml.InterproscanXmlParser 方法)
__init__() (Bio.Seq.MutableSeq 方法)
__init__() (Bio.Seq.Seq 方法)
__init__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__init__() (Bio.Seq.UnknownSeq 方法)
__init__() (Bio.SeqFeature.CompoundLocation 方法)
__init__() (Bio.SeqFeature.FeatureLocation 方法)
__init__() (Bio.SeqFeature.PositionGap 方法)
__init__() (Bio.SeqFeature.Reference 方法)
__init__() (Bio.SeqFeature.SeqFeature 方法)
__init__() (Bio.SeqIO.AbiIO.AbiIterator 方法)
__init__() (Bio.SeqIO.FastaIO.FastaIterator 方法)
__init__() (Bio.SeqIO.FastaIO.FastaTwoLineIterator 方法)
__init__() (Bio.SeqIO.FastaIO.FastaTwoLineWriter 方法)
__init__() (Bio.SeqIO.FastaIO.FastaWriter 方法)
__init__() (Bio.SeqIO.GckIO.GckIterator 方法)
__init__() (Bio.SeqIO.IgIO.IgIterator 方法)
__init__() (Bio.SeqIO.InsdcIO.EmblCdsFeatureIterator 方法)
__init__() (Bio.SeqIO.InsdcIO.EmblIterator 方法)
__init__() (Bio.SeqIO.InsdcIO.GenBankCdsFeatureIterator 方法)
__init__() (Bio.SeqIO.InsdcIO.GenBankIterator 方法)
__init__() (Bio.SeqIO.InsdcIO.ImgtIterator 方法)
__init__() (Bio.SeqIO.Interfaces.SequenceIterator 方法)
__init__() (Bio.SeqIO.Interfaces.SequenceWriter 方法)
__init__() (Bio.SeqIO.Interfaces.SequentialSequenceWriter 方法)
__init__() (Bio.SeqIO.NibIO.NibIterator 方法)
__init__() (Bio.SeqIO.NibIO.NibWriter 方法)
__init__() (Bio.SeqIO.PdbIO.PdbSeqresIterator 方法)
__init__() (Bio.SeqIO.PhdIO.PhdWriter 方法)
__init__() (Bio.SeqIO.PirIO.PirIterator 方法)
__init__() (Bio.SeqIO.PirIO.PirWriter 方法)
__init__() (Bio.SeqIO.QualityIO.FastqPhredIterator 方法)
__init__() (Bio.SeqIO.QualityIO.QualPhredIterator 方法)
__init__() (Bio.SeqIO.QualityIO.QualPhredWriter 方法)
__init__() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
__init__() (Bio.SeqIO.SeqXmlIO.SeqXmlIterator 方法)
__init__() (Bio.SeqIO.SeqXmlIO.SeqXmlWriter 方法)
__init__() (Bio.SeqIO.SffIO.SffIterator 方法)
__init__() (Bio.SeqIO.SffIO.SffWriter 方法)
__init__() (Bio.SeqIO.SnapGeneIO.SnapGeneIterator 方法)
__init__() (Bio.SeqIO.TabIO.TabIterator 方法)
__init__() (Bio.SeqIO.TwoBitIO.TwoBitIterator 方法)
__init__() (Bio.SeqIO.UniprotIO.Parser 方法)
__init__() (Bio.SeqIO.XdnaIO.XdnaIterator 方法)
__init__() (Bio.SeqIO.XdnaIO.XdnaWriter 方法)
__init__() (Bio.SeqRecord.SeqRecord 方法)
__init__() (Bio.Sequencing.Ace.ACEFileRecord 方法)
__init__() (Bio.Sequencing.Ace.af 方法)
__init__() (Bio.Sequencing.Ace.bs 方法)
__init__() (Bio.Sequencing.Ace.Contig 方法)
__init__() (Bio.Sequencing.Ace.ct 方法)
__init__() (Bio.Sequencing.Ace.ds 方法)
__init__() (Bio.Sequencing.Ace.qa 方法)
__init__() (Bio.Sequencing.Ace.rd 方法)
__init__() (Bio.Sequencing.Ace.Reads 方法)
__init__() (Bio.Sequencing.Ace.rt 方法)
__init__() (Bio.Sequencing.Ace.wa 方法)
__init__() (Bio.Sequencing.Ace.wr 方法)
__init__() (Bio.Sequencing.Applications.BwaAlignCommandline 方法)
__init__() (Bio.Sequencing.Applications.BwaBwaswCommandline 方法)
__init__() (Bio.Sequencing.Applications.BwaIndexCommandline 方法)
__init__() (Bio.Sequencing.Applications.BwaMemCommandline 方法)
__init__() (Bio.Sequencing.Applications.BwaSampeCommandline 方法)
__init__() (Bio.Sequencing.Applications.BwaSamseCommandline 方法)
__init__() (Bio.Sequencing.Applications.NovoalignCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsCalmdCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsCatCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsFaidxCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsFixmateCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsIdxstatsCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsIndexCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsMergeCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsMpileupCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsPhaseCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsReheaderCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsRmdupCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsVersion0xSortCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 方法)
__init__() (Bio.Sequencing.Applications.SamtoolsViewCommandline 方法)
__init__() (Bio.Sequencing.Phd.Record 方法)
__init__() (Bio.SeqUtils.CodonUsage.CodonAdaptationIndex 方法)
__init__() (Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint 方法)
__init__() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
__init__() (Bio.SVDSuperimposer.SVDSuperimposer 方法)
__init__() (Bio.SwissProt.KeyWList.Record 方法)
__init__() (Bio.SwissProt.Record 方法)
__init__() (Bio.SwissProt.Reference 方法)
__init__() (Bio.SwissProt.SwissProtParserError 方法)
__init__() (Bio.UniGene.ProtsimLine 方法)
__init__() (Bio.UniGene.Record 方法)
__init__() (Bio.UniGene.SequenceLine 方法)
__init__() (Bio.UniGene.STSLine 方法)
__init__() (Bio.Wise.dnal.Statistics 方法)
__init__() (Bio.Wise.psw.AlignmentColumn 方法)
__init__() (Bio.Wise.psw.ColumnUnit 方法)
__init__() (BioSQL.BioSeq.DBSeqRecord 方法)
__init__() (BioSQL.BioSeqDatabase.Adaptor 方法)
__init__() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
__init__() (BioSQL.BioSeqDatabase.DBServer 方法)
__init__() (BioSQL.DBUtils.Generic_dbutils 方法)
__init__() (BioSQL.Loader.DatabaseLoader 方法)
__init__() (BioSQL.Loader.DatabaseRemover 方法)
__int__() (Bio.Phylo.PhyloXML.Confidence 方法)
__iter__() (Bio.Align.MultipleSeqAlignment 方法)
__iter__() (Bio.Align.PairwiseAlignments 方法)
__iter__() (Bio.AlignIO.Interfaces.AlignmentIterator 方法)
__iter__() (Bio.bgzf.BgzfReader 方法)
__iter__() (Bio.GenBank.Iterator 方法)
__iter__() (Bio.Nexus.StandardData.StandardData 方法)
__iter__() (Bio.PDB.AbstractPropertyMap.AbstractPropertyMap 方法)
__iter__() (Bio.PDB.Atom.DisorderedAtom 方法)
__iter__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__iter__() (Bio.PDB.Entity.Entity 方法)
__iter__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__iter__() (Bio.phenotype.phen_micro.WellRecord 方法)
__iter__() (Bio.Phylo.BaseTree.Clade 方法)
__iter__() (Bio.Phylo.PhyloXML.Events 方法)
__iter__() (Bio.Phylo.PhyloXML.Other 方法)
__iter__() (Bio.Phylo.PhyloXML.Phyloxml 方法)
__iter__() (Bio.SearchIO.BlastIO.blast_tab.BlastTabIndexer 方法)
__iter__() (Bio.SearchIO.BlastIO.blast_tab.BlastTabParser 方法)
__iter__() (Bio.SearchIO.BlastIO.blast_text.BlastTextParser 方法)
__iter__() (Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer 方法)
__iter__() (Bio.SearchIO.BlastIO.blast_xml.BlastXmlParser 方法)
__iter__() (Bio.SearchIO.BlatIO.BlatPslIndexer 方法)
__iter__() (Bio.SearchIO.BlatIO.BlatPslParser 方法)
__iter__() (Bio.SearchIO.FastaIO.FastaM10Indexer 方法)
__iter__() (Bio.SearchIO.FastaIO.FastaM10Parser 方法)
__iter__() (Bio.SearchIO.HHsuiteIO.hhsuite2_text.Hhsuite2TextParser 方法)
__iter__() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextIndexer 方法)
__iter__() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
__iter__() (Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabIndexer 方法)
__iter__() (Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabParser 方法)
__iter__() (Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextIndexer 方法)
__iter__() (Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextParser 方法)
__iter__() (Bio.SearchIO.InterproscanIO.interproscan_xml.InterproscanXmlParser 方法)
__iter__() (Bio.SeqFeature.CompoundLocation 方法)
__iter__() (Bio.SeqFeature.FeatureLocation 方法)
__iter__() (Bio.SeqFeature.SeqFeature 方法)
__iter__() (Bio.SeqIO.Interfaces.SequenceIterator 方法)
__iter__() (Bio.SeqRecord.SeqRecord 方法)
__iter__() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
__iter__() (BioSQL.BioSeqDatabase.DBServer 方法)
__le__() (Bio.Align.PairwiseAlignment 方法)
__le__() (Bio.PDB.Atom.Atom 方法)
__le__() (Bio.PDB.Chain.Chain 方法)
__le__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__le__() (Bio.PDB.Entity.Entity 方法)
__le__() (Bio.PDB.internal_coords.AtomKey 方法)
__le__() (Bio.PDB.internal_coords.Edron 方法)
__le__() (Bio.Phylo.PhyloXML.Confidence 方法)
__le__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__le___() (Bio.SeqRecord.SeqRecord 方法)
__len__() (Bio.Align.MultipleSeqAlignment 方法)
__len__() (Bio.Align.PairwiseAlignment 方法)
__len__() (Bio.Align.PairwiseAlignments 方法)
__len__() (Bio.AlignIO.MafIO.MafIndex 方法)
__len__() (Bio.Emboss.Primer3.Primers 方法)
__len__() (Bio.motifs.Motif 方法)
__len__() (Bio.Nexus.StandardData.StandardData 方法)
__len__() (Bio.PDB.AbstractPropertyMap.AbstractPropertyMap 方法)
__len__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__len__() (Bio.PDB.Entity.Entity 方法)
__len__() (Bio.PDB.FragmentMapper.Fragment 方法)
__len__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__len__() (Bio.phenotype.phen_micro.WellRecord 方法)
__len__() (Bio.Phylo.BaseTree.Clade 方法)
__len__() (Bio.Phylo.PhyloXML.Events 方法)
__len__() (Bio.Phylo.PhyloXML.Phyloxml 方法)
__len__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__len__() (Bio.Seq.UnknownSeq 方法)
__len__() (Bio.SeqFeature.CompoundLocation 方法)
__len__() (Bio.SeqFeature.FeatureLocation 方法)
__len__() (Bio.SeqFeature.SeqFeature 方法)
__len__() (Bio.SeqIO.TwoBitIO.TwoBitIterator 方法)
__len__() (Bio.SeqRecord.SeqRecord 方法)
__len__() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
__len__() (BioSQL.BioSeqDatabase.DBServer 方法)
__lt__() (Bio.Align.PairwiseAlignment 方法)
__lt__() (Bio.PDB.Atom.Atom 方法)
__lt__() (Bio.PDB.Chain.Chain 方法)
__lt__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__lt__() (Bio.PDB.Entity.Entity 方法)
__lt__() (Bio.PDB.internal_coords.AtomKey 方法)
__lt__() (Bio.PDB.internal_coords.Edron 方法)
__lt__() (Bio.Phylo.PhyloXML.Confidence 方法)
__lt__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__lt__() (Bio.SeqRecord.SeqRecord 方法)
__mod__() (Bio.Phylo.PhyloXML.Confidence 方法)
__mul__() (Bio.PDB.vectors.Vector 方法)
__mul__() (Bio.Phylo.PhyloXML.Confidence 方法)
__mul__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__mul__() (Bio.Seq.UnknownSeq 方法)
__ne__() (Bio.Align.PairwiseAlignment 方法)
__ne__() (Bio.Entrez.Parser.NoneElement 方法)
__ne__() (Bio.PDB.Atom.Atom 方法)
__ne__() (Bio.PDB.Entity.Entity 方法)
__ne__() (Bio.PDB.internal_coords.AtomKey 方法)
__ne__() (Bio.PDB.internal_coords.Edron 方法)
__ne__() (Bio.Phylo.PhyloXML.Confidence 方法)
__ne__() (Bio.SeqRecord.SeqRecord 方法)
__neg__() (Bio.PDB.vectors.Vector 方法)
__neg__() (Bio.Phylo.PhyloXML.Confidence 方法)
__new__()(Bio.Align.substitution_matrices.Array 静态方法)
__new__()(Bio.Entrez.Parser.IntegerElement 静态方法)
__new__()(Bio.Entrez.Parser.StringElement 静态方法)
__new__()(Bio.PDB.internal_coords.AtomKey.fieldsDef 静态方法)
__new__()(Bio.SeqFeature.AfterPosition 静态方法)
__new__()(Bio.SeqFeature.BeforePosition 静态方法)
__new__()(Bio.SeqFeature.BetweenPosition 静态方法)
__new__()(Bio.SeqFeature.ExactPosition 静态方法)
__new__()(Bio.SeqFeature.OneOfPosition 静态方法)
__new__()(Bio.SeqFeature.WithinPosition 静态方法)
__next__() (Bio.Align.PairwiseAlignments 方法)
__next__() (Bio.AlignIO.ClustalIO.ClustalIterator 方法)
__next__() (Bio.AlignIO.EmbossIO.EmbossIterator 方法)
__next__() (Bio.AlignIO.Interfaces.AlignmentIterator 方法)
__next__() (Bio.AlignIO.MauveIO.MauveIterator 方法)
__next__() (Bio.AlignIO.MsfIO.MsfIterator 方法)
__next__() (Bio.AlignIO.PhylipIO.PhylipIterator 方法)
__next__() (Bio.AlignIO.PhylipIO.SequentialPhylipIterator 方法)
__next__() (Bio.AlignIO.StockholmIO.StockholmIterator 方法)
__next__() (Bio.bgzf.BgzfReader 方法)
__next__() (Bio.Blast.ParseBlastTable.BlastTableReader 方法)
__next__() (Bio.GenBank.Iterator 方法)
__next__() (Bio.Nexus.Nexus.CharBuffer 方法)
__next__() (Bio.Nexus.StandardData.StandardData 方法)
__next__() (Bio.SeqIO.Interfaces.SequenceIterator 方法)
__nonzero__() (Bio.SeqFeature.CompoundLocation 方法)
__nonzero__() (Bio.SeqFeature.FeatureLocation 方法)
__pos__() (Bio.Phylo.PhyloXML.Confidence 方法)
__pow__() (Bio.PDB.vectors.Vector 方法)
__pow__() (Bio.Phylo.PhyloXML.Confidence 方法)
__radd__() (Bio.Phylo.PhyloXML.Confidence 方法)
__radd__() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
__radd__() (Bio.Seq.UnknownSeq 方法)
__radd__() (Bio.SeqFeature.CompoundLocation 方法)
__radd__() (Bio.SeqFeature.FeatureLocation 方法)
__radd__() (Bio.SeqRecord.SeqRecord 方法)
__rdivmod__() (Bio.Phylo.PhyloXML.Confidence 方法)
__reduce__() (Bio.Align.substitution_matrices.Array 方法)
__repr__() (Bio.Align.MultipleSeqAlignment 方法)
__repr__() (Bio.Align.substitution_matrices.Array 方法)
__repr__() (Bio.AlignIO.MafIO.MafIndex 方法)
__repr__() (Bio.Application.AbstractCommandline 方法)
__repr__() (Bio.Application.ApplicationError 方法)
__repr__() (Bio.Data.CodonTable.NCBICodonTable 方法)
__repr__() (Bio.Entrez.Parser.DictionaryElement 方法)
__repr__() (Bio.Entrez.Parser.IntegerElement 方法)
__repr__() (Bio.Entrez.Parser.ListElement 方法)
__repr__() (Bio.Entrez.Parser.NoneElement 方法)
__repr__() (Bio.Entrez.Parser.StringElement 方法)
__repr__() (Bio.ExPASy.cellosaurus.Record 方法)
__repr__() (Bio.ExPASy.Enzyme.Record 方法)
__repr__() (Bio.GenBank.Record.Feature 方法)
__repr__() (Bio.GenBank.Record.Qualifier 方法)
__repr__() (Bio.GenBank.utils.FeatureValueCleaner 方法)
__repr__() (Bio.Pathway.Interaction 方法)
__repr__() (Bio.Pathway.Network 方法)
__repr__() (Bio.Pathway.Reaction 方法)
__repr__() (Bio.Pathway.Rep.Graph.Graph 方法)
__repr__() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
__repr__() (Bio.Pathway.System 方法)
__repr__() (Bio.PDB.Atom.Atom 方法)
__repr__() (Bio.PDB.Atom.DisorderedAtom 方法)
__repr__() (Bio.PDB.Chain.Chain 方法)
__repr__() (Bio.PDB.FragmentMapper.Fragment 方法)
__repr__() (Bio.PDB.internal_coords.AtomKey 方法)
__repr__() (Bio.PDB.internal_coords.AtomKey.fieldsDef 方法)
__repr__() (Bio.PDB.internal_coords.Dihedron 方法)
__repr__() (Bio.PDB.internal_coords.Edron 方法)
__repr__() (Bio.PDB.internal_coords.Hedron 方法)
__repr__() (Bio.PDB.internal_coords.IC_Residue 方法)
__repr__() (Bio.PDB.Model.Model 方法)
__repr__() (Bio.PDB.PDBIO.Select 方法)
__repr__() (Bio.PDB.Polypeptide.Polypeptide 方法)
__repr__() (Bio.PDB.Residue.DisorderedResidue 方法)
__repr__() (Bio.PDB.Residue.Residue 方法)
__repr__() (Bio.PDB.Structure.Structure 方法)
__repr__() (Bio.PDB.vectors.Vector 方法)
__repr__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__repr__() (Bio.phenotype.phen_micro.WellRecord 方法)
__repr__() (Bio.Phylo.BaseTree.BranchColor 方法)
__repr__() (Bio.Phylo.BaseTree.TreeElement 方法)
__repr__() (Bio.Seq.UnknownSeq 方法)
__repr__() (Bio.SeqFeature.AbstractPosition 方法)
__repr__() (Bio.SeqFeature.AfterPosition 方法)
__repr__() (Bio.SeqFeature.BeforePosition 方法)
__repr__() (Bio.SeqFeature.BetweenPosition 方法)
__repr__() (Bio.SeqFeature.CompoundLocation 方法)
__repr__() (Bio.SeqFeature.ExactPosition 方法)
__repr__() (Bio.SeqFeature.FeatureLocation 方法)
__repr__() (Bio.SeqFeature.OneOfPosition 方法)
__repr__() (Bio.SeqFeature.PositionGap 方法)
__repr__() (Bio.SeqFeature.Reference 方法)
__repr__() (Bio.SeqFeature.SeqFeature 方法)
__repr__() (Bio.SeqFeature.UnknownPosition 方法)
__repr__() (Bio.SeqFeature.WithinPosition 方法)
__repr__() (Bio.SeqRecord.SeqRecord 方法)
__repr__() (Bio.UniGene.ProtsimLine 方法)
__repr__() (Bio.UniGene.Record 方法)
__repr__() (Bio.UniGene.SequenceLine 方法)
__repr__() (Bio.UniGene.STSLine 方法)
__repr__() (Bio.Wise.psw.AlignmentColumn 方法)
__repr__() (Bio.Wise.psw.ColumnUnit 方法)
__repr__() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
__repr__() (BioSQL.BioSeqDatabase.DBServer 方法)
__rfloordiv__() (Bio.Phylo.PhyloXML.Confidence 方法)
__rmod__() (Bio.Phylo.PhyloXML.Confidence 方法)
__rmul__() (Bio.Phylo.PhyloXML.Confidence 方法)
__rmul__() (Bio.Seq.UnknownSeq 方法)
__rpow__() (Bio.Phylo.PhyloXML.Confidence 方法)
__rsub__() (Bio.Phylo.PhyloXML.Confidence 方法)
__rtruediv__() (Bio.Phylo.PhyloXML.Confidence 方法)
__setattr__() (Bio.Align.PairwiseAligner 方法)
__setattr__() (Bio.Application.AbstractCommandline 方法)
__setitem__() (Bio.Align.substitution_matrices.Array 方法)
__setitem__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__setitem__() (Bio.PDB.vectors.Vector 方法)
__setitem__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__setitem__() (Bio.phenotype.phen_micro.WellRecord 方法)
__setitem__() (Bio.Phylo.PhyloXML.Events 方法)
__setitem__() (Bio.Phylo.TreeConstruction.DistanceMatrix 方法)
__setitem__() (Bio.Seq.MutableSeq 方法)
__setstate__() (Bio.Align.PairwiseAligner 方法)
__setstate__() (Bio.Align.substitution_matrices.Array 方法)
__slots__(Bio.PDB.internal_coords.AtomKey.fieldsDef 属性)
__slots__(Bio.Seq.SequenceDataAbstractBaseClass 属性)
__str__() (Bio.Align.AlignInfo.PSSM 方法)
__str__() (Bio.Align.MultipleSeqAlignment 方法)
__str__() (Bio.Align.PairwiseAlignment 方法)
__str__() (Bio.Align.substitution_matrices.Array 方法)
__str__() (Bio.Application.AbstractCommandline 方法)
__str__() (Bio.Application.ApplicationError 方法)
__str__() (Bio.Blast.Record.Alignment 方法)
__str__() (Bio.Blast.Record.Description 方法)
__str__() (Bio.Blast.Record.DescriptionExtItem 方法)
__str__() (Bio.Blast.Record.HSP 方法)
__str__() (Bio.codonalign.codonalignment.CodonAlignment 方法)
__str__() (Bio.Data.CodonTable.CodonTable 方法)
__str__() (Bio.Emboss.PrimerSearch.InputRecord 方法)
__str__() (Bio.Entrez.Parser.CorruptedXMLError 方法)
__str__() (Bio.Entrez.Parser.NotXMLError 方法)
__str__() (Bio.Entrez.Parser.ValidationError 方法)
__str__() (Bio.ExPASy.cellosaurus.Record 方法)
__str__() (Bio.ExPASy.Enzyme.Record 方法)
__str__() (Bio.GenBank.Record.Feature 方法)
__str__() (Bio.GenBank.Record.Qualifier 方法)
__str__() (Bio.GenBank.Record.Record 方法)
__str__() (Bio.GenBank.Record.Reference 方法)
__str__() (Bio.Geo.Record.Record 方法)
__str__() (Bio.KEGG.Compound.Record 方法)
__str__() (Bio.KEGG.Enzyme.Record 方法)
__str__() (Bio.KEGG.Gene.Record 方法)
__str__() (Bio.KEGG.KGML.KGML_pathway.Entry 方法)
__str__() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
__str__() (Bio.KEGG.KGML.KGML_pathway.Reaction 方法)
__str__() (Bio.KEGG.KGML.KGML_pathway.Relation 方法)
__str__() (Bio.MarkovModel.MarkovModel 方法)
__str__() (Bio.motifs.clusterbuster.Record 方法)
__str__() (Bio.motifs.Instances 方法)
__str__() (Bio.motifs.jaspar.db.JASPAR5 方法)
__str__() (Bio.motifs.jaspar.Motif 方法)
__str__() (Bio.motifs.jaspar.Record 方法)
__str__() (Bio.motifs.matrix.GenericPositionMatrix 方法)
__str__() (Bio.motifs.Motif 方法)
__str__() (Bio.motifs.pfm.Record 方法)
__str__() (Bio.motifs.transfac.Record 方法)
__str__() (Bio.motifs.xms.Record 方法)
__str__() (Bio.Nexus.StandardData.StandardData 方法)
__str__() (Bio.Nexus.Trees.Tree 方法)
__str__() (Bio.Pathway.Interaction 方法)
__str__() (Bio.Pathway.Network 方法)
__str__() (Bio.Pathway.Reaction 方法)
__str__() (Bio.Pathway.Rep.Graph.Graph 方法)
__str__() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
__str__() (Bio.Pathway.System 方法)
__str__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__str__() (Bio.phenotype.phen_micro.WellRecord 方法)
__str__() (Bio.Phylo.BaseTree.BranchColor 方法)
__str__() (Bio.Phylo.BaseTree.Clade 方法)
__str__() (Bio.Phylo.BaseTree.Tree 方法)
__str__() (Bio.Phylo.BaseTree.TreeElement 方法)
__str__() (Bio.Phylo.PhyloXML.Accession 方法)
__str__() (Bio.Phylo.PhyloXML.Date 方法)
__str__() (Bio.Phylo.PhyloXML.Id 方法)
__str__() (Bio.Phylo.PhyloXML.MolSeq 方法)
__str__() (Bio.Phylo.PhyloXML.Phyloxml 方法)
__str__() (Bio.Phylo.PhyloXML.Polygon 方法)
__str__() (Bio.Phylo.PhyloXML.Taxonomy 方法)
__str__() (Bio.Phylo.PhyloXML.Uri 方法)
__str__() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
__str__() (Bio.PopGen.GenePop.Record 方法)
__str__() (Bio.SCOP.Cla.Record 方法)
__str__() (Bio.SCOP.Des.Record 方法)
__str__() (Bio.SCOP.Dom.Record 方法)
__str__() (Bio.SCOP.Domain 方法)
__str__() (Bio.SCOP.Hie.Record 方法)
__str__() (Bio.SCOP.Node 方法)
__str__() (Bio.SCOP.Residues.Residues 方法)
__str__() (Bio.Seq.UnknownSeq 方法)
__str__() (Bio.SeqFeature.AfterPosition 方法)
__str__() (Bio.SeqFeature.BeforePosition 方法)
__str__() (Bio.SeqFeature.BetweenPosition 方法)
__str__() (Bio.SeqFeature.CompoundLocation 方法)
__str__() (Bio.SeqFeature.ExactPosition 方法)
__str__() (Bio.SeqFeature.FeatureLocation 方法)
__str__() (Bio.SeqFeature.OneOfPosition 方法)
__str__() (Bio.SeqFeature.PositionGap 方法)
__str__() (Bio.SeqFeature.Reference 方法)
__str__() (Bio.SeqFeature.SeqFeature 方法)
__str__() (Bio.SeqFeature.WithinPosition 方法)
__str__() (Bio.SeqRecord.SeqRecord 方法)
__str__() (Bio.Wise.dnal.Statistics 方法)
__sub__() (Bio.PDB.Atom.Atom 方法)
__sub__() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
__sub__() (Bio.PDB.FragmentMapper.Fragment 方法)
__sub__() (Bio.PDB.vectors.Vector 方法)
__sub__() (Bio.phenotype.phen_micro.PlateRecord 方法)
__sub__() (Bio.phenotype.phen_micro.WellRecord 方法)
__sub__() (Bio.Phylo.PhyloXML.Confidence 方法)
__truediv__() (Bio.PDB.vectors.Vector 方法)
__truediv__() (Bio.Phylo.PhyloXML.Confidence 方法)
A
aacateg(Bio.Emboss.Applications.FProtDistCommandline 属性)
aamatrix(Bio.Align.Applications.MafftCommandline 属性)
AbiIterator(Bio.SeqIO.AbiIO 中的类)
AbstractAtomPropertyMap(Bio.PDB.AbstractPropertyMap 中的类)
AbstractCommandline(Bio.Application 中的类)
AbstractDPAlgorithms(Bio.HMM.DynamicProgramming 中的类)
AbstractPosition(Bio.SeqFeature 中的类)
AbstractPropertyMap(Bio.PDB.AbstractPropertyMap 中的类)
AbstractResiduePropertyMap(Bio.PDB.AbstractPropertyMap 中的类)
AbstractTrainer(Bio.HMM.Trainer 中的类)
accept_atom() (Bio.PDB.Dice.ChainSelector 方法)
accept_atom() (Bio.PDB.PDBIO.Select 方法)
accept_atoms(Bio.PDB.internal_coords.IC_Residue 属性)
accept_chain() (Bio.PDB.Dice.ChainSelector 方法)
accept_chain() (Bio.PDB.PDBIO.Select 方法)
accept_deuteriums(Bio.PDB.internal_coords.IC_Residue 属性)
accept_hydrogens(Bio.PDB.internal_coords.IC_Residue 属性)
accept_mainchain(Bio.PDB.internal_coords.IC_Residue 属性)
accept_model() (Bio.PDB.Dice.ChainSelector 方法)
accept_model() (Bio.PDB.PDBIO.Select 方法)
accept_residue() (Bio.PDB.Dice.ChainSelector 方法)
accept_residue() (Bio.PDB.PDBIO.Select 方法)
accept_resnames(Bio.PDB.internal_coords.IC_Residue 属性)
accession() (Bio.Phylo.PhyloXMLIO.Parser 方法)
accession() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Accession(Bio.Phylo.PhyloXML 中的类)
ACEFileRecord(Bio.Sequencing.Ace 中的类)
AceIterator()(在 Bio.SeqIO.AceIO 模块中)
adam_consensus()(在 Bio.Phylo.Consensus 模块中)
adapter3(Bio.Sequencing.Applications.NovoalignCommandline 属性)
adapter5(Bio.Sequencing.Applications.NovoalignCommandline 属性)
Adaptor(BioSQL.BioSeqDatabase 中的类)
add() (Bio.Nexus.Nexus.StepMatrix 方法)
add() (Bio.Nexus.Nodes.Chain 方法)
add() (Bio.PDB.Entity.Entity 方法)
add() (Bio.PDB.Residue.DisorderedResidue 方法)
add() (Bio.PDB.Residue.Residue 方法)
add_annotation() (Bio.Phylo.NeXMLIO.Parser 方法)
add_component() (Bio.KEGG.KGML.KGML_pathway.Entry 方法)
add_edge() (Bio.Pathway.Rep.Graph.Graph 方法)
add_edge() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
add_entry() (Bio.Blast.ParseBlastTable.BlastTableRec 方法)
add_entry() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
add_graphics() (Bio.KEGG.KGML.KGML_pathway.Entry 方法)
add_interaction() (Bio.Pathway.Network 方法)
add_node() (Bio.Pathway.Rep.Graph.Graph 方法)
add_node() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
add_primer_set() (Bio.Emboss.PrimerSearch.InputRecord 方法)
add_product() (Bio.KEGG.KGML.KGML_pathway.Reaction 方法)
add_reaction() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
add_reaction() (Bio.Pathway.System 方法)
add_relation() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
add_residue() (Bio.PDB.FragmentMapper.Fragment 方法)
add_sequence() (Bio.Nexus.Nexus.Nexus 方法)
add_species() (Bio.Pathway.Network 方法)
add_substrate() (Bio.KEGG.KGML.KGML_pathway.Reaction 方法)
add_succ() (Bio.Nexus.Nodes.Node 方法)
adjustdirectionaccurately(Bio.Align.Applications.MafftCommandline 属性)
adjustdirection(Bio.Align.Applications.MafftCommandline 属性)
afc_v(Bio.Align.Applications.DialignCommandline 属性)
afc(Bio.Align.Applications.DialignCommandline 属性)
affine_penalty(Bio.pairwise2 中的类)
aformat(Bio.Emboss.Applications.NeedleallCommandline 属性)
aformat(Bio.Emboss.Applications.NeedleCommandline 属性)
aformat(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
aformat(Bio.Emboss.Applications.StretcherCommandline 属性)
aformat(Bio.Emboss.Applications.WaterCommandline 属性)
AfterPosition(Bio.SeqFeature 中的类)
af(Bio.Sequencing.Ace 中的类)
algorithm(Bio.Phylo.Applications.RaxmlCommandline 属性)
algorithm(Bio.Sequencing.Applications.BwaIndexCommandline 属性)
align() (Bio.Align.PairwiseAligner 方法)
align()(在 Bio.Wise 模块中)
align()(在 Bio.Wise.dnal 模块中)
align()(在 Bio.Wise.psw 模块中)
aligned(Bio.Align.PairwiseAlignment 属性)
alignment_order(Bio.Align.Applications.MSAProbsCommandline 属性)
AlignmentColumnFullException
AlignmentColumn(Bio.Wise.psw 中的类)
AlignmentHasDifferentLengthsError
AlignmentIterator(Bio.AlignIO.Interfaces 中的类)
AlignmentWriter(Bio.AlignIO.Interfaces 中的类)
Alignment(Bio.Blast.Record 中的类)
Alignment(Bio.Wise.psw 中的类)
align(Bio.Align.Applications.ClustalwCommandline 属性)
align(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
all_ids() (Bio.Nexus.Nodes.Chain 方法)
all_pairs()(在 Bio.Wise 模块中)
AllBonds(Bio.PDB.internal_coords.IC_Residue 属性)
allow_all_transitions() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
allow_transition() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
alphabet(Bio.Align.substitution_matrices.Array 属性)
alpha(Bio.Phylo.Applications.PhymlCommandline 属性)
alt() (Bio.Phylo.PhyloXMLIO.Writer 方法)
altloc_match() (Bio.PDB.internal_coords.AtomKey 方法)
altloc(Bio.PDB.internal_coords.AtomKey.fieldsDef 属性)
AmbiguousCodonTable(Bio.Data.CodonTable 中的类)
AmbiguousForwardTable(Bio.Data.CodonTable 中的类)
amino(Bio.Align.Applications.MafftCommandline 属性)
amino(Bio.Emboss.Applications.IepCommandline 属性)
Amplifier(Bio.Emboss.PrimerSearch 中的类)
anchorspacing(Bio.Align.Applications.MuscleCommandline 属性)
anchors(Bio.Align.Applications.MuscleCommandline 属性)
anc(Bio.Align.Applications.DialignCommandline 属性)
angle() (Bio.PDB.vectors.Vector 方法)
angle(Bio.PDB.internal_coords.Dihedron 属性)
angle(Bio.PDB.internal_coords.Hedron 属性)
annotate()(在 Bio.PDB.PSEA 模块中)
annotation() (Bio.Phylo.PhyloXMLIO.Parser 方法)
annotation() (Bio.Phylo.PhyloXMLIO.Writer 方法)
annotations(BioSQL.BioSeq.DBSeqRecord 属性)
Annotation(Bio.Phylo.PhyloXML 中的类)
annot(Bio.Align.Applications.MSAProbsCommandline 属性)
annot(Bio.Align.Applications.ProbconsCommandline 属性)
anticonsensus(Bio.motifs.matrix.GenericPositionMatrix 属性)
anticonsensus(Bio.motifs.Motif 属性)
aoutfeat(Bio.Emboss.Applications.DiffseqCommandline 属性)
append() (Bio.Align.MultipleSeqAlignment 方法)
append() (Bio.SCOP.Raf.SeqMap 方法)
append() (Bio.Seq.MutableSeq 方法)
append() (Bio.Wise.psw.Alignment 方法)
append() (Bio.Wise.psw.AlignmentColumn 方法)
append_item() (Bio.Blast.Record.DescriptionExt 方法)
append_sets() (Bio.Nexus.Nexus.Nexus 方法)
ApplicationError
apply() (Bio.PDB.Superimposer.Superimposer 方法)
applyMtx() (Bio.PDB.internal_coords.IC_Residue 方法)
archive(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
aromaticity() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
Array(Bio.Align.substitution_matrices 中的类)
as_fasta()(在 Bio.SeqIO.FastaIO 模块中)
as_fasta_2line()(在 Bio.SeqIO.FastaIO 模块中)
as_fastq()(在 Bio.SeqIO.QualityIO 模块中)
as_fastq_illumina()(在 Bio.SeqIO.QualityIO 模块中)
as_fastq_solexa()(在 Bio.SeqIO.QualityIO 模块中)
as_handle()(在 Bio.File 模块中)
as_phyloxml() (Bio.Phylo.BaseTree.Tree 方法)
as_phyloxml() (Bio.Phylo.PhyloXML.Phylogeny 方法)
as_qual()(在 Bio.SeqIO.QualityIO 模块中)
as_tab()(在 Bio.SeqIO.TabIO 模块中)
asequence(Bio.Emboss.Applications.DiffseqCommandline 属性)
asequence(Bio.Emboss.Applications.NeedleallCommandline 属性)
asequence(Bio.Emboss.Applications.NeedleCommandline 属性)
asequence(Bio.Emboss.Applications.StretcherCommandline 属性)
asequence(Bio.Emboss.Applications.TranalignCommandline 属性)
asequence(Bio.Emboss.Applications.WaterCommandline 属性)
assemble() (Bio.PDB.internal_coords.IC_Residue 方法)
assemble_residues() (Bio.PDB.internal_coords.IC_Chain 方法)
Astral(Bio.SCOP 中的类)
atm241()(Bio.PDB.internal_coords.IC_Residue 静态方法)
atm(Bio.PDB.internal_coords.AtomKey.fieldsDef 属性)
atom_re(Bio.PDB.internal_coords.AtomKey 属性)
atom_to_internal_coordinates() (Bio.PDB.Chain.Chain 方法)
atom_to_internal_coordinates() (Bio.PDB.internal_coords.IC_Chain 方法)
atom_to_internal_coordinates() (Bio.PDB.internal_coords.IC_Residue 方法)
atom_to_internal_coordinates() (Bio.PDB.Model.Model 方法)
atom_to_internal_coordinates() (Bio.PDB.Structure.Structure 方法)
AtomIterator()(在 Bio.SeqIO.PdbIO 模块中)
AtomKey.fieldsDef(Bio.PDB.internal_coords 中的类)
AtomKey(Bio.PDB.internal_coords 中的类)
Atom(Bio.PDB.Atom 中的类)
autocommit() (BioSQL.BioSeqDatabase.Adaptor 方法)
autocommit() (BioSQL.DBUtils.Generic_dbutils 方法)
autocommit() (BioSQL.DBUtils.Pgdb_dbutils 方法)
autocommit() (BioSQL.DBUtils.Psycopg2_dbutils 方法)
auto(Bio.Align.Applications.ClustalOmegaCommandline 属性)
auto(Bio.Align.Applications.MafftCommandline 属性)
auto(Bio.Emboss.Applications.DiffseqCommandline 属性)
auto(Bio.Emboss.Applications.EInvertedCommandline 属性)
auto(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
auto(Bio.Emboss.Applications.ETandemCommandline 属性)
auto(Bio.Emboss.Applications.FConsenseCommandline 属性)
auto(Bio.Emboss.Applications.FDNADistCommandline 属性)
auto(Bio.Emboss.Applications.FDNAParsCommandline 属性)
auto(Bio.Emboss.Applications.FNeighborCommandline 属性)
auto(Bio.Emboss.Applications.FProtDistCommandline 属性)
auto(Bio.Emboss.Applications.FProtParsCommandline 属性)
auto(Bio.Emboss.Applications.FSeqBootCommandline 属性)
auto(Bio.Emboss.Applications.FTreeDistCommandline 属性)
auto(Bio.Emboss.Applications.FuzznucCommandline 属性)
auto(Bio.Emboss.Applications.FuzzproCommandline 属性)
auto(Bio.Emboss.Applications.IepCommandline 属性)
auto(Bio.Emboss.Applications.NeedleallCommandline 属性)
auto(Bio.Emboss.Applications.NeedleCommandline 属性)
auto(Bio.Emboss.Applications.PalindromeCommandline 属性)
auto(Bio.Emboss.Applications.Primer3Commandline 属性)
auto(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
auto(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
auto(Bio.Emboss.Applications.SeqretCommandline 属性)
auto(Bio.Emboss.Applications.StretcherCommandline 属性)
auto(Bio.Emboss.Applications.TranalignCommandline 属性)
auto(Bio.Emboss.Applications.WaterCommandline 属性)
a(Bio.Align.Applications.ProbconsCommandline 属性)
a(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
A(Bio.Sequencing.Applications.BwaMemCommandline 属性)
a(Bio.Sequencing.Applications.BwaMemCommandline 属性)
a(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
A(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
A(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
A(Bio.Sequencing.Applications.SamtoolsPhaseCommandline 属性)
B
b1(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
b2(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
back_table(Bio.Data.CodonTable.CodonTable 属性)
back_transcribe() (Bio.Seq.UnknownSeq 方法)
back_transcribe()(在 Bio.Seq 模块中)
background(Bio.motifs.Motif 属性)
backward_algorithm() (Bio.HMM.DynamicProgramming.AbstractDPAlgorithms 方法)
bam_file(Bio.Sequencing.Applications.SamtoolsReheaderCommandline 属性)
bams(Bio.Sequencing.Applications.SamtoolsCatCommandline 属性)
bam(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
BASE_FEATURE_FORMAT(Bio.GenBank.Record.Record 属性)
BASE_FORMAT(Bio.GenBank.Record.Record 属性)
base_id(Bio.motifs.jaspar.Motif 属性)
basefreq(Bio.Emboss.Applications.FDNADistCommandline 属性)
basefreq(Bio.Emboss.Applications.FProtDistCommandline 属性)
BasemlError
Baseml(Bio.Phylo.PAML.baseml 中的类)
BaumWelchTrainer(Bio.HMM.Trainer 中的类)
bc() (Bio.Phylo.PhyloXMLIO.Writer 方法)
BeforePosition(Bio.SeqFeature 中的类)
best_hit_overhang(Bio.Blast.Applications.NcbiblastnCommandline 属性)
best_hit_overhang(Bio.Blast.Applications.NcbiblastpCommandline 属性)
best_hit_overhang(Bio.Blast.Applications.NcbiblastxCommandline 属性)
best_hit_overhang(Bio.Blast.Applications.NcbideltablastCommandline 属性)
best_hit_overhang(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
best_hit_overhang(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
best_hit_overhang(Bio.Blast.Applications.NcbitblastnCommandline 属性)
best_hit_overhang(Bio.Blast.Applications.NcbitblastxCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbiblastnCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbiblastpCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbiblastxCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbideltablastCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbitblastnCommandline 属性)
best_hit_score_edge(Bio.Blast.Applications.NcbitblastxCommandline 属性)
best(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
BetweenPosition(Bio.SeqFeature 中的类)
bf_search()(在 Bio.Pathway.Rep.MultiGraph 模块中)
bgcolor(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
BgzfBlocks()(在 Bio.bgzf 模块中)
BgzfReader(Bio.bgzf 中的类)
BgzfWriter(Bio.bgzf 中的类)
binary_characters() (Bio.Phylo.PhyloXMLIO.Parser 方法)
binary_characters() (Bio.Phylo.PhyloXMLIO.Writer 方法)
binary_constraint(Bio.Phylo.Applications.RaxmlCommandline 属性)
BinaryCharacters(Bio.Phylo.PhyloXML 中的类)
Bio
模块
Bio.Affy
模块
Bio.Affy.CelFile
模块
Bio.Align
模块
Bio.Align.AlignInfo
模块
Bio.Align.Applications
模块
Bio.Align.substitution_matrices
模块
Bio.AlignIO
模块
Bio.AlignIO.ClustalIO
模块
Bio.AlignIO.EmbossIO
模块
Bio.AlignIO.FastaIO
模块
Bio.AlignIO.Interfaces
模块
Bio.AlignIO.MafIO
模块
Bio.AlignIO.MauveIO
模块
Bio.AlignIO.MsfIO
模块
Bio.AlignIO.NexusIO
模块
Bio.AlignIO.PhylipIO
模块
Bio.AlignIO.StockholmIO
模块
Bio.Application
模块
Bio.bgzf
模块
Bio.Blast
模块
Bio.Blast.Applications
模块
Bio.Blast.NCBIWWW
模块
Bio.Blast.NCBIXML
模块
Bio.Blast.ParseBlastTable
模块
Bio.Blast.Record
模块
Bio.CAPS
模块
Bio.Cluster
模块
Bio.codonalign
模块
Bio.codonalign.codonalignment
模块
Bio.codonalign.codonseq
模块
Bio.Compass
模块
Bio.Data
模块
Bio.Data.CodonTable
模块
Bio.Data.IUPACData
模块
Bio.Data.SCOPData
模块
Bio.Emboss
模块
Bio.Emboss.Applications
模块
Bio.Emboss.Primer3
模块
Bio.Emboss.PrimerSearch
模块
Bio.Entrez
模块
Bio.Entrez.Parser
模块
Bio.ExPASy
模块
Bio.ExPASy.cellosaurus
模块
Bio.ExPASy.Enzyme
模块
Bio.ExPASy.Prodoc
模块
Bio.ExPASy.Prosite
模块
Bio.ExPASy.ScanProsite
模块
Bio.File
模块
Bio.GenBank
模块
Bio.GenBank.Record
模块
Bio.GenBank.Scanner
模块
Bio.GenBank.utils
模块
Bio.Geo
模块
Bio.Geo.Record
模块
Bio.HMM
模块
Bio.HMM.DynamicProgramming
模块
Bio.HMM.MarkovModel
模块
Bio.HMM.Trainer
模块
Bio.HMM.Utilities
模块
Bio.KEGG
模块
Bio.KEGG.Compound
模块
Bio.KEGG.Enzyme
模块
Bio.KEGG.Gene
模块
Bio.KEGG.KGML
模块
Bio.KEGG.KGML.KGML_parser
模块
Bio.KEGG.KGML.KGML_pathway
模块
Bio.KEGG.Map
模块
Bio.KEGG.REST
模块
Bio.kNN
模块
Bio.LogisticRegression
模块
Bio.MarkovModel
模块
Bio.MaxEntropy
模块
Bio.Medline
模块
Bio.motifs
模块
Bio.motifs.alignace
模块
Bio.motifs.applications
模块
Bio.motifs.clusterbuster
模块
Bio.motifs.jaspar
模块
Bio.motifs.jaspar.db
模块
Bio.motifs.mast
模块
Bio.motifs.matrix
模块
Bio.motifs.meme
模块
Bio.motifs.minimal
模块
Bio.motifs.pfm
模块
Bio.motifs.thresholds
模块
Bio.motifs.transfac
模块
Bio.motifs.xms
模块
Bio.NaiveBayes
模块
Bio.Nexus
模块
Bio.Nexus.Nexus
模块
Bio.Nexus.Nodes
模块
Bio.Nexus.StandardData
模块
Bio.Nexus.Trees
模块
Bio.NMR
模块
Bio.NMR.NOEtools
模块
Bio.NMR.xpktools
模块
Bio.pairwise2
模块
Bio.Pathway
模块
Bio.Pathway.Rep
模块
Bio.Pathway.Rep.Graph
模块
Bio.Pathway.Rep.MultiGraph
模块
Bio.PDB
模块
Bio.PDB.AbstractPropertyMap
模块
Bio.PDB.Atom
模块
Bio.PDB.Chain
模块
Bio.PDB.Dice
模块
Bio.PDB.DSSP
模块
Bio.PDB.Entity
模块
Bio.PDB.FragmentMapper
模块
Bio.PDB.HSExposure
模块
Bio.PDB.ic_data
模块
Bio.PDB.ic_rebuild
模块
Bio.PDB.internal_coords
模块
Bio.PDB.MMCIF2Dict
模块
Bio.PDB.mmcifio
模块
Bio.PDB.MMCIFParser
模块
Bio.PDB.Model
模块
Bio.PDB.NACCESS
模块
Bio.PDB.NeighborSearch
模块
Bio.PDB.parse_pdb_header
模块
Bio.PDB.PDBExceptions
模块
Bio.PDB.PDBIO
模块
Bio.PDB.PDBList
模块
Bio.PDB.PDBParser
模块
Bio.PDB.PICIO
模块
Bio.PDB.Polypeptide
模块
Bio.PDB.PSEA
模块
Bio.PDB.QCPSuperimposer
模块
Bio.PDB.Residue
模块
Bio.PDB.ResidueDepth
模块
Bio.PDB.SASA
模块
Bio.PDB.SCADIO
模块
Bio.PDB.Selection
模块
Bio.PDB.Structure
模块
Bio.PDB.StructureAlignment
模块
Bio.PDB.StructureBuilder
模块
Bio.PDB.Superimposer
模块
Bio.PDB.vectors
模块
Bio.phenotype
模块
Bio.phenotype.phen_micro
模块
Bio.phenotype.pm_fitting
模块
Bio.Phylo
模块
Bio.Phylo.Applications
模块
Bio.Phylo.BaseTree
模块
Bio.Phylo.CDAO
模块
Bio.Phylo.Consensus
模块
Bio.Phylo.Newick
模块
Bio.Phylo.NewickIO
模块
Bio.Phylo.NeXML
模块
Bio.Phylo.NeXMLIO
模块
Bio.Phylo.NexusIO
模块
Bio.Phylo.PAML
模块
Bio.Phylo.PAML.baseml
模块
Bio.Phylo.PAML.chi2
模块
Bio.Phylo.PAML.codeml
模块
Bio.Phylo.PAML.yn00
模块
Bio.Phylo.PhyloXML
模块
Bio.Phylo.PhyloXMLIO
模块
Bio.Phylo.TreeConstruction
模块
Bio.PopGen
模块
Bio.PopGen.GenePop
模块
Bio.PopGen.GenePop.Controller
模块
Bio.PopGen.GenePop.EasyController
模块
Bio.PopGen.GenePop.FileParser
模块
Bio.PopGen.GenePop.LargeFileParser
模块
Bio.Restriction
模块
Bio.Restriction.PrintFormat
模块
Bio.Restriction.Restriction_Dictionary
模块
Bio.SCOP
模块
Bio.SCOP.Cla
模块
Bio.SCOP.Des
模块
Bio.SCOP.Dom
模块
Bio.SCOP.Hie
模块
Bio.SCOP.Raf
模块
Bio.SCOP.Residues
模块
Bio.SearchIO
模块
Bio.SearchIO.BlastIO
模块
Bio.SearchIO.BlastIO.blast_tab
模块
Bio.SearchIO.BlastIO.blast_text
模块
Bio.SearchIO.BlastIO.blast_xml
模块
Bio.SearchIO.BlatIO
模块
Bio.SearchIO.ExonerateIO
模块
Bio.SearchIO.ExonerateIO.exonerate_cigar
模块
Bio.SearchIO.ExonerateIO.exonerate_text
模块
Bio.SearchIO.ExonerateIO.exonerate_vulgar
模块
Bio.SearchIO.FastaIO
模块
Bio.SearchIO.HHsuiteIO
模块
Bio.SearchIO.HHsuiteIO.hhsuite2_text
模块
Bio.SearchIO.HmmerIO
模块
Bio.SearchIO.HmmerIO.hmmer2_text
模块
Bio.SearchIO.HmmerIO.hmmer3_domtab
模块
Bio.SearchIO.HmmerIO.hmmer3_tab
模块
Bio.SearchIO.HmmerIO.hmmer3_text
模块
Bio.SearchIO.InterproscanIO
模块
Bio.SearchIO.InterproscanIO.interproscan_xml
模块
Bio.Seq
模块
Bio.SeqFeature
模块
Bio.SeqIO
模块
Bio.SeqIO.AbiIO
模块
Bio.SeqIO.AceIO
模块
Bio.SeqIO.FastaIO
模块
Bio.SeqIO.GckIO
模块
Bio.SeqIO.IgIO
模块
Bio.SeqIO.InsdcIO
模块
Bio.SeqIO.Interfaces
模块
Bio.SeqIO.NibIO
模块
Bio.SeqIO.PdbIO
模块
Bio.SeqIO.PhdIO
模块
Bio.SeqIO.PirIO
模块
Bio.SeqIO.QualityIO
模块
Bio.SeqIO.SeqXmlIO
模块
Bio.SeqIO.SffIO
模块
Bio.SeqIO.SnapGeneIO
模块
Bio.SeqIO.SwissIO
模块
Bio.SeqIO.TabIO
模块
Bio.SeqIO.TwoBitIO
模块
Bio.SeqIO.UniprotIO
模块
Bio.SeqIO.XdnaIO
模块
Bio.SeqRecord
模块
Bio.Sequencing
模块
Bio.Sequencing.Ace
模块
Bio.Sequencing.Applications
模块
Bio.Sequencing.Phd
模块
Bio.SeqUtils
模块
Bio.SeqUtils.CheckSum
模块
Bio.SeqUtils.CodonUsage
模块
Bio.SeqUtils.CodonUsageIndices
模块
Bio.SeqUtils.IsoelectricPoint
模块
Bio.SeqUtils.lcc
模块
Bio.SeqUtils.MeltingTemp
模块
Bio.SeqUtils.ProtParam
模块
Bio.SeqUtils.ProtParamData
模块
Bio.SVDSuperimposer
模块
Bio.SwissProt
模块
Bio.SwissProt.KeyWList
模块
Bio.TogoWS
模块
Bio.UniGene
模块
Bio.UniProt
模块
Bio.UniProt.GOA
模块
Bio.Wise
模块
Bio.Wise.dnal
模块
Bio.Wise.psw
模块
bionj(Bio.Phylo.Applications.FastTreeCommandline 属性)
BiopythonDeprecationWarning
BiopythonExperimentalWarning
BiopythonParserWarning
BiopythonWarning
BioSeqDatabase(BioSQL.BioSeqDatabase 中的类)
BioSQL
模块
BioSQL.BioSeq
模块
BioSQL.BioSeqDatabase
模块
BioSQL.DBUtils
模块
BioSQL.Loader
模块
bipartition_filename(Bio.Phylo.Applications.RaxmlCommandline 属性)
blastdb_version(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
BlastParser(Bio.Blast.NCBIXML 中的类)
BlastTabIndexer(Bio.SearchIO.BlastIO.blast_tab 中的类)
BlastTableEntry(Bio.Blast.ParseBlastTable 中的类)
BlastTableReader(Bio.Blast.ParseBlastTable 中的类)
BlastTableRec(Bio.Blast.ParseBlastTable 中的类)
BlastTabParser(Bio.SearchIO.BlastIO.blast_tab 中的类)
BlastTabWriter(Bio.SearchIO.BlastIO.blast_tab 中的类)
BlastTextParser(Bio.SearchIO.BlastIO.blast_text 中的类)
BlastXmlIndexer(Bio.SearchIO.BlastIO.blast_xml 中的类)
BlastXmlParser(Bio.SearchIO.BlastIO.blast_xml 中的类)
BlastXmlWriter(Bio.SearchIO.BlastIO.blast_xml 中的类)
Blast(Bio.Blast.Record 中的类)
BlatPslIndexer(Bio.SearchIO.BlatIO 中的类)
BlatPslParser(Bio.SearchIO.BlatIO 中的类)
BlatPslWriter(Bio.SearchIO.BlatIO 中的类)
block_size(Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer 属性)
BLOCKS_PER_LINE(Bio.SeqIO.InsdcIO.EmblWriter 属性)
blocksize(Bio.Emboss.Applications.FSeqBootCommandline 属性)
Block(Bio.Nexus.Nexus 中的类)
BLOCK(Bio.SeqIO.SeqXmlIO.SeqXmlIterator 属性)
blue() (Bio.Phylo.PhyloXMLIO.Writer 方法)
bl(Bio.Align.Applications.MafftCommandline 属性)
bootlabels(Bio.Align.Applications.ClustalwCommandline 属性)
bootstrap() (Bio.Nexus.Nexus.Nexus 方法)
bootstrap()(在 Bio.Phylo.Consensus 模块中)
bootstrap_branch_lengths(Bio.Phylo.Applications.RaxmlCommandline 属性)
bootstrap_consensus()(在 Bio.Phylo.Consensus 模块中)
bootstrap_seed(Bio.Phylo.Applications.RaxmlCommandline 属性)
bootstrap_trees()(在 Bio.Phylo.Consensus 模块中)
bootstrap(Bio.Align.Applications.ClustalwCommandline 属性)
bootstrap(Bio.Phylo.Applications.PhymlCommandline 属性)
boot(Bio.Phylo.Applications.FastTreeCommandline 属性)
bounds(Bio.KEGG.KGML.KGML_pathway.Entry 属性)
bounds(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
bounds(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
boutfeat(Bio.Emboss.Applications.DiffseqCommandline 属性)
branch_length() (Bio.Phylo.PhyloXMLIO.Writer 方法)
BranchColor(Bio.Phylo.BaseTree 中的类)
BranchColor(Bio.Phylo.PhyloXML 中的类)
branchlength2support() (Bio.Nexus.Trees.Tree 方法)
brenner(Bio.Align.Applications.MuscleCommandline 属性)
brief(Bio.Emboss.Applications.NeedleallCommandline 属性)
brief(Bio.Emboss.Applications.NeedleCommandline 属性)
brief(Bio.Emboss.Applications.WaterCommandline 属性)
bsequence(Bio.Emboss.Applications.DiffseqCommandline 属性)
bsequence(Bio.Emboss.Applications.NeedleallCommandline 属性)
bsequence(Bio.Emboss.Applications.NeedleCommandline 属性)
bsequence(Bio.Emboss.Applications.StretcherCommandline 属性)
bsequence(Bio.Emboss.Applications.TranalignCommandline 属性)
bsequence(Bio.Emboss.Applications.WaterCommandline 属性)
bs(Bio.Sequencing.Ace 中的类)
build()(在 Bio.codonalign 模块中)
build_glyCB() (Bio.PDB.internal_coords.IC_Residue 方法)
build_rak_cache() (Bio.PDB.internal_coords.IC_Residue 方法)
build_tree() (Bio.Phylo.TreeConstruction.DistanceTreeConstructor 方法)
build_tree() (Bio.Phylo.TreeConstruction.ParsimonyTreeConstructor 方法)
build_tree() (Bio.Phylo.TreeConstruction.TreeConstructor 方法)
BwaAlignCommandline(Bio.Sequencing.Applications 中的类)
BwaBwaswCommandline(Bio.Sequencing.Applications 中的类)
BwaIndexCommandline(Bio.Sequencing.Applications 中的类)
BwaMemCommandline(Bio.Sequencing.Applications 中的类)
BwaSampeCommandline(Bio.Sequencing.Applications 中的类)
BwaSamseCommandline(Bio.Sequencing.Applications 中的类)
B(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
b(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
b(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
B(Bio.Sequencing.Applications.BwaMemCommandline 属性)
b(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
B(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
b(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
b(Bio.Sequencing.Applications.SamtoolsPhaseCommandline 属性)
b(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
C
ca_depth()(在 Bio.PDB.ResidueDepth 模块中)
cai_for_gene() (Bio.SeqUtils.CodonUsage.CodonAdaptationIndex 方法)
cal_dn_ds()(在 Bio.codonalign.codonseq 模块中)
calc_affine_penalty()(在 Bio.pairwise2 模块中)
calc_allele_genotype_freqs() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_angle()(在 Bio.PDB.vectors 模块中)
calc_dihedral()(在 Bio.PDB.vectors 模块中)
calc_diversities_fis_with_identity() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_diversities_fis_with_size() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_fst_all() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_fst_pair() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_ibd() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
calc_ibd_diplo() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_ibd_haplo() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_rho_all() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calc_rho_pair() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
calculate() (Bio.motifs.matrix.PositionSpecificScoringMatrix 方法)
calculate()(在 Bio.kNN 模块中)
calculate()(在 Bio.LogisticRegression 模块中)
calculate()(在 Bio.MaxEntropy 模块中)
calculate()(在 Bio.NaiveBayes 模块中)
calculate_pseudocounts()(在 Bio.motifs.jaspar 模块中)
CaPPBuilder(Bio.PDB.Polypeptide 中的类)
CAPSMap(Bio.CAPS 中的类)
carboxyl(Bio.Emboss.Applications.IepCommandline 属性)
case(Bio.Align.Applications.ClustalwCommandline 属性)
categories(Bio.Emboss.Applications.FDNADistCommandline 属性)
catergories(Bio.Emboss.Applications.FProtDistCommandline 属性)
catergories(Bio.Emboss.Applications.FSeqBootCommandline 属性)
cat(Bio.Phylo.Applications.FastTreeCommandline 属性)
cdao_to_obo()(在 Bio.Phylo.NeXMLIO 模块中)
cdf_chi2()(在 Bio.Phylo.PAML.chi2 模块中)
center_of_mass() (Bio.PDB.Atom.DisorderedAtom 方法)
center_of_mass() (Bio.PDB.Entity.Entity 方法)
center(Bio.Align.Applications.MuscleCommandline 属性)
centre(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
ChainException
ChainSelector(Bio.PDB.Dice 中的类)
Chain(Bio.Nexus.Nodes 中的类)
Chain(Bio.PDB.Chain 中的类)
characterDataHandlerEscape() (Bio.Entrez.Parser.DataHandler 方法)
characterDataHandlerRaw() (Bio.Entrez.Parser.DataHandler 方法)
characters() (Bio.ExPASy.ScanProsite.ContentHandler 方法)
characters() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
CharBuffer(Bio.Nexus.Nexus 中的类)
charge_at_pH() (Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint 方法)
charge_at_pH() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
checkpoints(Bio.Phylo.Applications.RaxmlCommandline 属性)
check(Bio.Align.Applications.ClustalwCommandline 属性)
chem_correction()(在 Bio.SeqUtils.MeltingTemp 模块中)
child_edges() (Bio.Pathway.Rep.Graph.Graph 方法)
child_edges() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
children() (Bio.Pathway.Rep.Graph.Graph 方法)
children() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
cic(Bio.PDB.internal_coords.Dihedron 属性)
cic(Bio.PDB.internal_coords.Hedron 属性)
CifAtomIterator()(在 Bio.SeqIO.PdbIO 模块中)
CifSeqresIterator()(在 Bio.SeqIO.PdbIO 模块中)
clade() (Bio.Phylo.PhyloXMLIO.Writer 方法)
clade_relation() (Bio.Phylo.PhyloXMLIO.Parser 方法)
clade_relation() (Bio.Phylo.PhyloXMLIO.Writer 方法)
CladeRelation(Bio.Phylo.PhyloXML 中的类)
Clade(Bio.Phylo.BaseTree 中的类)
clade(Bio.Phylo.BaseTree.Tree 属性)
Clade(Bio.Phylo.CDAO 中的类)
Clade(Bio.Phylo.Newick 中的类)
Clade(Bio.Phylo.NeXML 中的类)
Clade(Bio.Phylo.PhyloXML 中的类)
classify()(在 Bio.kNN 模块中)
classify()(在 Bio.LogisticRegression 模块中)
classify()(在 Bio.MaxEntropy 模块中)
classify()(在 Bio.NaiveBayes 模块中)
clean() (Bio.AlignIO.Interfaces.AlignmentWriter 方法)
clean() (Bio.SeqIO.Interfaces.SequenceWriter 方法)
clean_value() (Bio.GenBank.utils.FeatureValueCleaner 方法)
clear_ic() (Bio.PDB.internal_coords.IC_Chain 方法)
clear_transforms() (Bio.PDB.internal_coords.IC_Residue 方法)
close() (Bio.bgzf.BgzfReader 方法)
close() (Bio.bgzf.BgzfWriter 方法)
close() (BioSQL.BioSeqDatabase.Adaptor 方法)
close() (BioSQL.BioSeqDatabase.DBServer 方法)
close(Bio.Phylo.Applications.FastTreeCommandline 属性)
ClustalIterator(Bio.AlignIO.ClustalIO 中的类)
ClustalOmegaCommandline(Bio.Align.Applications 中的类)
clustalout(Bio.Align.Applications.MafftCommandline 属性)
ClustalwCommandline(Bio.Align.Applications 中的类)
ClustalWriter(Bio.AlignIO.ClustalIO 中的类)
clustalw(Bio.Align.Applications.MSAProbsCommandline 属性)
clustalw(Bio.Align.Applications.ProbconsCommandline 属性)
cluster1(Bio.Align.Applications.MuscleCommandline 属性)
cluster2(Bio.Align.Applications.MuscleCommandline 属性)
cluster_threshold_fast(Bio.Phylo.Applications.RaxmlCommandline 属性)
cluster_threshold(Bio.Phylo.Applications.RaxmlCommandline 属性)
clustercentroids() (Bio.Cluster.Record 方法)
clustercentroids()(在 Bio.Cluster 模块中)
clusterdistance() (Bio.Cluster.Record 方法)
clusterdistance()(在 Bio.Cluster 模块中)
clusteringout(Bio.Align.Applications.ClustalOmegaCommandline 属性)
clustering(Bio.Align.Applications.ClustalwCommandline 属性)
clustersize(Bio.Align.Applications.ClustalOmegaCommandline 属性)
cluster(Bio.Align.Applications.MuscleCommandline 属性)
clwout(Bio.Align.Applications.MuscleCommandline 属性)
clwstrictout(Bio.Align.Applications.MuscleCommandline 属性)
clwstrict(Bio.Align.Applications.MuscleCommandline 属性)
clw(Bio.Align.Applications.MuscleCommandline 属性)
Cmodulo(Bio.Restriction.PrintFormat.PrintFormat 属性)
cmp_sccs()(在 Bio.SCOP 模块中)
code() (Bio.Phylo.PhyloXMLIO.Writer 方法)
CodemlError
Codeml(Bio.Phylo.PAML.codeml 中的类)
CodonAdaptationIndex(Bio.SeqUtils.CodonUsage 中的类)
CodonAlignment(Bio.codonalign.codonalignment 中的类)
CodonSeq(Bio.codonalign.codonseq 中的类)
CodonTable(Bio.Data.CodonTable 中的类)
codon(Bio.Align.Applications.PrankCommandline 属性)
collapse() (Bio.Nexus.Nodes.Chain 方法)
collapse() (Bio.Phylo.BaseTree.TreeMixin 方法)
collapse_all() (Bio.Phylo.BaseTree.TreeMixin 方法)
collapse_genera() (Bio.Nexus.Trees.Tree 方法)
color() (Bio.Phylo.PhyloXMLIO.Parser 方法)
color() (Bio.Phylo.PhyloXMLIO.Writer 方法)
color_names(Bio.Phylo.BaseTree.BranchColor 属性)
color(Bio.Phylo.BaseTree.Clade 属性)
column_annotations(Bio.Align.MultipleSeqAlignment 属性)
ColumnUnit(Bio.Wise.psw 中的类)
combine()(在 Bio.Nexus.Nexus 模块中)
Commandline(Bio.Nexus.Nexus 中的类)
commit() (BioSQL.BioSeqDatabase.Adaptor 方法)
commit() (BioSQL.BioSeqDatabase.DBServer 方法)
common_ancestor() (Bio.Nexus.Trees.Tree 方法)
common_ancestor() (Bio.Phylo.BaseTree.TreeMixin 方法)
common_name() (Bio.Phylo.PhyloXMLIO.Writer 方法)
comp_based_stats(Bio.Blast.Applications.NcbiblastpCommandline 属性)
comp_based_stats(Bio.Blast.Applications.NcbiblastxCommandline 属性)
comp_based_stats(Bio.Blast.Applications.NcbideltablastCommandline 属性)
comp_based_stats(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
comp_based_stats(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
comp_based_stats(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
comp_based_stats(Bio.Blast.Applications.NcbitblastnCommandline 属性)
compare_residues()(在 Bio.PDB.ic_rebuild 模块中)
complement() (Bio.Seq.MutableSeq 方法)
complement() (Bio.Seq.Seq 方法)
complement() (Bio.Seq.UnknownSeq 方法)
complement()(在 Bio.Seq 模块中)
complement_rna() (Bio.Seq.UnknownSeq 方法)
complement_rna()(在 Bio.Seq 模块中)
complement(Bio.Emboss.Applications.FuzznucCommandline 属性)
Component(Bio.KEGG.KGML.KGML_pathway 中的类)
CompoundLocation(Bio.SeqFeature 中的类)
compounds(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
compute() (Bio.PDB.SASA.ShrakeRupley 方法)
confidence() (Bio.Phylo.PhyloXMLIO.Parser 方法)
confidence() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Confidence(Bio.Phylo.PhyloXML 中的类)
confidence(Bio.Phylo.PhyloXML.Clade 属性)
confidence(Bio.Phylo.PhyloXML.Phylogeny 属性)
consensus()(在 Bio.Nexus.Trees 模块中)
consensus(Bio.motifs.matrix.GenericPositionMatrix 属性)
consensus(Bio.motifs.Motif 属性)
consistency(Bio.Align.Applications.MSAProbsCommandline 属性)
consistency(Bio.Align.Applications.ProbconsCommandline 属性)
ConsoleWidth(Bio.Restriction.PrintFormat.PrintFormat 属性)
constant() (Bio.Nexus.Nexus.Nexus 方法)
constraints(Bio.Phylo.Applications.FastTreeCommandline 属性)
constraintWeight(Bio.Phylo.Applications.FastTreeCommandline 属性)
ContentHandler(Bio.ExPASy.ScanProsite 中的类)
ContentHandler(Bio.SeqIO.SeqXmlIO 中的类)
Contig(Bio.Sequencing.Ace 中的类)
convert()(在 Bio.AlignIO 模块中)
convert()(在 Bio.SearchIO 模块中)
convert()(在 Bio.SeqIO 模块中)
convert()(在 Bio.TogoWS 模块中)
convert_absolute_support() (Bio.Nexus.Trees.Tree 方法)
convert(Bio.Align.Applications.ClustalwCommandline 属性)
convert(Bio.Align.Applications.PrankCommandline 属性)
convert(Bio.Align.Applications.TCoffeeCommandline 属性)
coord_space()(在 Bio.PDB.vectors 模块中)
coords_to_residue() (Bio.PDB.internal_coords.IC_Residue 方法)
coords_to_structure() (Bio.PDB.internal_coords.IC_Chain 方法)
coords(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
copy() (Bio.Align.substitution_matrices.Array 方法)
copy() (Bio.PDB.Atom.Atom 方法)
copy() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
copy() (Bio.PDB.Entity.Entity 方法)
copy() (Bio.PDB.vectors.Vector 方法)
cores(Bio.Sequencing.Applications.NovoalignCommandline 属性)
core(Bio.Align.Applications.MuscleCommandline 属性)
CorruptedXMLError
count() (Bio.motifs.Instances 方法)
count() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
count() (Bio.Seq.UnknownSeq 方法)
count_amino_acids() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
count_overlap() (Bio.Seq.UnknownSeq 方法)
count_terminals() (Bio.Nexus.Trees.Tree 方法)
count_terminals() (Bio.Phylo.BaseTree.TreeMixin 方法)
crc32()(在 Bio.SeqUtils.CheckSum 模块中)
crc64()(在 Bio.SeqUtils.CheckSum 模块中)
create()(在 Bio.motifs 模块中)
create_contingency_tables() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
crop_matrix() (Bio.Nexus.Nexus.Nexus 方法)
cstatus() (Bio.Nexus.Nexus.Nexus 方法)
CsvIterator()(在 Bio.phenotype.phen_micro 模块中)
cs(Bio.Align.Applications.DialignCommandline 属性)
ct(Bio.Sequencing.Ace 中的类)
culling_limit(Bio.Blast.Applications.NcbiblastnCommandline 属性)
culling_limit(Bio.Blast.Applications.NcbiblastpCommandline 属性)
culling_limit(Bio.Blast.Applications.NcbiblastxCommandline 属性)
culling_limit(Bio.Blast.Applications.NcbideltablastCommandline 属性)
culling_limit(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
culling_limit(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
culling_limit(Bio.Blast.Applications.NcbitblastnCommandline 属性)
culling_limit(Bio.Blast.Applications.NcbitblastxCommandline 属性)
cut() (Bio.Cluster.Tree 方法)
cw(Bio.Align.Applications.DialignCommandline 属性)
c(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
c(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
c(Bio.Sequencing.Applications.BwaIndexCommandline 属性)
C(Bio.Sequencing.Applications.BwaMemCommandline 属性)
c(Bio.Sequencing.Applications.BwaMemCommandline 属性)
C(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
C(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
c(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
D
d2h(Bio.PDB.internal_coords.AtomKey 属性)
data_generator() (Bio.PopGen.GenePop.LargeFileParser.Record 方法)
data_table()(在 Bio.NMR.xpktools 模块中)
DatabaseLoader(BioSQL.Loader 中的类)
DatabaseRemover(BioSQL.Loader 中的类)
DatabaseReport(Bio.Blast.Record 中的类)
database(Bio.Sequencing.Applications.NovoalignCommandline 属性)
datafile(Bio.Emboss.Applications.FNeighborCommandline 属性)
datafile(Bio.Emboss.Applications.NeedleallCommandline 属性)
datafile(Bio.Emboss.Applications.NeedleCommandline 属性)
datafile(Bio.Emboss.Applications.StretcherCommandline 属性)
datafile(Bio.Emboss.Applications.WaterCommandline 属性)
DataHandlerMeta(Bio.Entrez.Parser 中的类)
DataHandler(Bio.Entrez.Parser 中的类)
datatype(Bio.Phylo.Applications.PhymlCommandline 属性)
data(Bio.Seq.MutableSeq 属性)
date() (Bio.Phylo.PhyloXMLIO.Parser 方法)
date() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Date(Bio.Phylo.PhyloXML 中的类)
db_gencode(Bio.Blast.Applications.NcbitblastnCommandline 属性)
db_gencode(Bio.Blast.Applications.NcbitblastxCommandline 属性)
db_hard_mask(Bio.Blast.Applications.NcbiblastnCommandline 属性)
db_hard_mask(Bio.Blast.Applications.NcbiblastpCommandline 属性)
db_hard_mask(Bio.Blast.Applications.NcbiblastxCommandline 属性)
db_hard_mask(Bio.Blast.Applications.NcbitblastnCommandline 属性)
db_hard_mask(Bio.Blast.Applications.NcbitblastxCommandline 属性)
db_soft_mask(Bio.Blast.Applications.NcbiblastnCommandline 属性)
db_soft_mask(Bio.Blast.Applications.NcbiblastpCommandline 属性)
db_soft_mask(Bio.Blast.Applications.NcbiblastxCommandline 属性)
db_soft_mask(Bio.Blast.Applications.NcbitblastnCommandline 属性)
db_soft_mask(Bio.Blast.Applications.NcbitblastxCommandline 属性)
DBSeqRecord(BioSQL.BioSeq 中的类)
DBServer(BioSQL.BioSeqDatabase 中的类)
dbsize(Bio.Blast.Applications.NcbiblastnCommandline 属性)
dbsize(Bio.Blast.Applications.NcbiblastpCommandline 属性)
dbsize(Bio.Blast.Applications.NcbiblastxCommandline 属性)
dbsize(Bio.Blast.Applications.NcbideltablastCommandline 属性)
dbsize(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
dbsize(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
dbsize(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
dbsize(Bio.Blast.Applications.NcbitblastnCommandline 属性)
dbsize(Bio.Blast.Applications.NcbitblastxCommandline 属性)
dbtype(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
dbxrefs(BioSQL.BioSeq.DBSeqRecord 属性)
db(Bio.Blast.Applications.NcbiblastnCommandline 属性)
db(Bio.Blast.Applications.NcbiblastpCommandline 属性)
db(Bio.Blast.Applications.NcbiblastxCommandline 属性)
db(Bio.Blast.Applications.NcbideltablastCommandline 属性)
db(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
db(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
db(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
db(Bio.Blast.Applications.NcbitblastnCommandline 属性)
db(Bio.Blast.Applications.NcbitblastxCommandline 属性)
dealign(Bio.Align.Applications.ClustalOmegaCommandline 属性)
debug(Bio.Emboss.Applications.DiffseqCommandline 属性)
debug(Bio.Emboss.Applications.EInvertedCommandline 属性)
debug(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
debug(Bio.Emboss.Applications.ETandemCommandline 属性)
debug(Bio.Emboss.Applications.FConsenseCommandline 属性)
debug(Bio.Emboss.Applications.FDNADistCommandline 属性)
debug(Bio.Emboss.Applications.FDNAParsCommandline 属性)
debug(Bio.Emboss.Applications.FNeighborCommandline 属性)
debug(Bio.Emboss.Applications.FProtDistCommandline 属性)
debug(Bio.Emboss.Applications.FProtParsCommandline 属性)
debug(Bio.Emboss.Applications.FSeqBootCommandline 属性)
debug(Bio.Emboss.Applications.FTreeDistCommandline 属性)
debug(Bio.Emboss.Applications.FuzznucCommandline 属性)
debug(Bio.Emboss.Applications.FuzzproCommandline 属性)
debug(Bio.Emboss.Applications.IepCommandline 属性)
debug(Bio.Emboss.Applications.NeedleallCommandline 属性)
debug(Bio.Emboss.Applications.NeedleCommandline 属性)
debug(Bio.Emboss.Applications.PalindromeCommandline 属性)
debug(Bio.Emboss.Applications.Primer3Commandline 属性)
debug(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
debug(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
debug(Bio.Emboss.Applications.SeqretCommandline 属性)
debug(Bio.Emboss.Applications.StretcherCommandline 属性)
debug(Bio.Emboss.Applications.TranalignCommandline 属性)
debug(Bio.Emboss.Applications.WaterCommandline 属性)
decode() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
DEFAULT_PSEUDO(Bio.HMM.MarkovModel.MarkovModelBuilder 属性)
default_startpos() (Bio.PDB.internal_coords.IC_Residue 方法)
degenerate_consensus(Bio.motifs.matrix.GenericPositionMatrix 属性)
degenerate_consensus(Bio.motifs.Motif 属性)
depths() (Bio.Phylo.BaseTree.TreeMixin 方法)
desc() (Bio.Phylo.PhyloXMLIO.Writer 方法)
description() (Bio.Phylo.PhyloXMLIO.Writer 方法)
DescriptionExtItem(Bio.Blast.Record 中的类)
DescriptionExt(Bio.Blast.Record 中的类)
Description(Bio.Blast.Record 中的类)
destroy_transition() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
detach_child() (Bio.PDB.Entity.Entity 方法)
detach_parent() (Bio.PDB.Atom.Atom 方法)
detach_parent() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
detach_parent() (Bio.PDB.Entity.Entity 方法)
df_search()(在 Bio.Pathway.Rep.MultiGraph 模块中)
diagbreak(Bio.Align.Applications.MuscleCommandline 属性)
diaglength(Bio.Align.Applications.MuscleCommandline 属性)
diagmargin(Bio.Align.Applications.MuscleCommandline 属性)
diags(Bio.Align.Applications.MuscleCommandline 属性)
DialignCommandline(Bio.Align.Applications 中的类)
dictionary_match(Bio.pairwise2 中的类)
DictionaryElement(Bio.Entrez.Parser 中的类)
die(Bio.Emboss.Applications.DiffseqCommandline 属性)
die(Bio.Emboss.Applications.EInvertedCommandline 属性)
die(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
die(Bio.Emboss.Applications.ETandemCommandline 属性)
die(Bio.Emboss.Applications.FConsenseCommandline 属性)
die(Bio.Emboss.Applications.FDNADistCommandline 属性)
die(Bio.Emboss.Applications.FDNAParsCommandline 属性)
die(Bio.Emboss.Applications.FNeighborCommandline 属性)
die(Bio.Emboss.Applications.FProtDistCommandline 属性)
die(Bio.Emboss.Applications.FProtParsCommandline 属性)
die(Bio.Emboss.Applications.FSeqBootCommandline 属性)
die(Bio.Emboss.Applications.FTreeDistCommandline 属性)
die(Bio.Emboss.Applications.FuzznucCommandline 属性)
die(Bio.Emboss.Applications.FuzzproCommandline 属性)
die(Bio.Emboss.Applications.IepCommandline 属性)
die(Bio.Emboss.Applications.NeedleallCommandline 属性)
die(Bio.Emboss.Applications.NeedleCommandline 属性)
die(Bio.Emboss.Applications.PalindromeCommandline 属性)
die(Bio.Emboss.Applications.Primer3Commandline 属性)
die(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
die(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
die(Bio.Emboss.Applications.SeqretCommandline 属性)
die(Bio.Emboss.Applications.StretcherCommandline 属性)
die(Bio.Emboss.Applications.TranalignCommandline 属性)
die(Bio.Emboss.Applications.WaterCommandline 属性)
DifferentialCutsite(Bio.CAPS 中的类)
DiffseqCommandline(Bio.Emboss.Applications 中的类)
Dihedron(Bio.PDB.internal_coords 中的类)
dimer(Bio.Align.Applications.MuscleCommandline 属性)
directory(Bio.Entrez.Parser.DataHandlerMeta 属性)
disordered_add() (Bio.PDB.Atom.DisorderedAtom 方法)
disordered_add() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
disordered_add() (Bio.PDB.Residue.DisorderedResidue 方法)
disordered_get() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
disordered_get_id_list() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
disordered_get_list() (Bio.PDB.Atom.DisorderedAtom 方法)
disordered_get_list() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
disordered_has_id() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
disordered_remove() (Bio.PDB.Atom.DisorderedAtom 方法)
disordered_remove() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
disordered_remove() (Bio.PDB.Residue.DisorderedResidue 方法)
disordered_select() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
DisorderedAtom(Bio.PDB.Atom 中的类)
DisorderedEntityWrapper(Bio.PDB.Entity 中的类)
DisorderedResidue(Bio.PDB.Residue 中的类)
display() (Bio.Nexus.Trees.Tree 方法)
dist_pearson() (Bio.motifs.matrix.PositionSpecificScoringMatrix 方法)
dist_pearson_at() (Bio.motifs.matrix.PositionSpecificScoringMatrix 方法)
distance() (Bio.Nexus.Trees.Tree 方法)
distance() (Bio.Phylo.BaseTree.TreeMixin 方法)
distance1(Bio.Align.Applications.MuscleCommandline 属性)
distance2(Bio.Align.Applications.MuscleCommandline 属性)
DistanceCalculator(Bio.Phylo.TreeConstruction 中的类)
distancematrix() (Bio.Cluster.Record 方法)
distancematrix()(在 Bio.Cluster 模块中)
DistanceMatrix(Bio.Phylo.TreeConstruction 中的类)
DistanceTreeConstructor(Bio.Phylo.TreeConstruction 中的类)
distmat_full_iter(Bio.Align.Applications.ClustalOmegaCommandline 属性)
distmat_full(Bio.Align.Applications.ClustalOmegaCommandline 属性)
distmat_in(Bio.Align.Applications.ClustalOmegaCommandline 属性)
distmat_out(Bio.Align.Applications.ClustalOmegaCommandline 属性)
distribution() (Bio.motifs.matrix.PositionSpecificScoringMatrix 方法)
distribution() (Bio.Phylo.PhyloXMLIO.Parser 方法)
distribution() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Distribution(Bio.Phylo.PhyloXML 中的类)
disulphides(Bio.Emboss.Applications.IepCommandline 属性)
dna_models(Bio.Phylo.TreeConstruction.DistanceCalculator 属性)
dnaconc(Bio.Emboss.Applications.Primer3Commandline 属性)
dnafreqs(Bio.Align.Applications.PrankCommandline 属性)
dnamatrix(Bio.Align.Applications.ClustalwCommandline 属性)
domain() (Bio.Phylo.PhyloXMLIO.Parser 方法)
domain() (Bio.Phylo.PhyloXMLIO.Writer 方法)
domain_architecture() (Bio.Phylo.PhyloXMLIO.Parser 方法)
domain_architecture() (Bio.Phylo.PhyloXMLIO.Writer 方法)
domain_inclusion_ethresh(Bio.Blast.Applications.NcbideltablastCommandline 属性)
DomainArchitecture(Bio.Phylo.PhyloXML 中的类)
domainsClusteredByEv() (Bio.SCOP.Astral 方法)
domainsClusteredById() (Bio.SCOP.Astral 方法)
Domain(Bio.SCOP 中的类)
dotdiff(Bio.Emboss.Applications.FDNAParsCommandline 属性)
dotdiff(Bio.Emboss.Applications.FProtParsCommandline 属性)
dotdiff(Bio.Emboss.Applications.FSeqBootCommandline 属性)
dots(Bio.Align.Applications.PrankCommandline 属性)
download_entire_pdb() (Bio.PDB.PDBList.PDBList 方法)
download_obsolete_entries() (Bio.PDB.PDBList.PDBList 方法)
download_pdb_files() (Bio.PDB.PDBList.PDBList 方法)
dpparttree(Bio.Align.Applications.MafftCommandline 属性)
dssp_dict_from_pdb_file()(在 Bio.PDB.DSSP 模块中)
DSSP(Bio.PDB.DSSP 中的类)
ds(Bio.Align.Applications.DialignCommandline 属性)
ds(Bio.Sequencing.Ace 中的类)
dtype(Bio.Emboss.Applications.FTreeDistCommandline 属性)
dumb_consensus() (Bio.Align.AlignInfo.SummaryInfo 方法)
duplications() (Bio.Phylo.PhyloXMLIO.Writer 方法)
dust(Bio.Blast.Applications.NcbiblastnCommandline 属性)
d(Bio.Align.Applications.PrankCommandline 属性)
d(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
d(Bio.Sequencing.Applications.BwaMemCommandline 属性)
D(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
d(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
E
ease(Bio.Emboss.Applications.FProtDistCommandline 属性)
EasyController(Bio.PopGen.GenePop.EasyController 中的类)
ecitmatch()(在 Bio.Entrez 模块中)
edges() (Bio.Pathway.Rep.Graph.Graph 方法)
edges() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
edron_re(Bio.PDB.internal_coords.Edron 属性)
Edron(Bio.PDB.internal_coords 中的类)
efetch()(在 Bio.Entrez 模块中)
egquery()(在 Bio.Entrez 模块中)
einfo()(在 Bio.Entrez 模块中)
EInvertedCommandline(Bio.Emboss.Applications 中的类)
elementDecl() (Bio.Entrez.Parser.DataHandler 方法)
element(Bio.KEGG.KGML.KGML_pathway.Component 属性)
element(Bio.KEGG.KGML.KGML_pathway.Entry 属性)
element(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
element(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
element(Bio.KEGG.KGML.KGML_pathway.Reaction 属性)
element(Bio.KEGG.KGML.KGML_pathway.Relation 属性)
elink()(在 Bio.Entrez 模块中)
em0(Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 属性)
em1(Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 属性)
em2(Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 属性)
EMBL_INDENT(Bio.GenBank.Scanner.EmblScanner 属性)
EMBL_SPACER(Bio.GenBank.Scanner.EmblScanner 属性)
EmblCdsFeatureIterator(Bio.SeqIO.InsdcIO 中的类)
EmblIterator(Bio.SeqIO.InsdcIO 中的类)
EmblScanner(Bio.GenBank.Scanner 中的类)
EmblWriter(Bio.SeqIO.InsdcIO 中的类)
EmbossIterator(Bio.AlignIO.EmbossIO 中的类)
emissions(Bio.Align.Applications.ProbconsCommandline 属性)
encode() (Bio.Seq.Seq 方法)
endDBRefElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
endDescriptionElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
endElement() (Bio.ExPASy.ScanProsite.ContentHandler 方法)
endElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
endEntryElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
endErrorElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
endextend(Bio.Emboss.Applications.NeedleallCommandline 属性)
endextend(Bio.Emboss.Applications.NeedleCommandline 属性)
endgaps(Bio.Align.Applications.ClustalwCommandline 属性)
endIntegerElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
endNamespaceDeclHandler() (Bio.Entrez.Parser.DataHandler 方法)
endnum_re(Bio.PDB.internal_coords.AtomKey 属性)
endopen(Bio.Emboss.Applications.NeedleallCommandline 属性)
endopen(Bio.Emboss.Applications.NeedleCommandline 属性)
endPropertyElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
endRawElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
endSequenceElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
endSeqXMLElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
endSkipElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
endSpeciesElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
endStringElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
endswith() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
endweight(Bio.Emboss.Applications.NeedleallCommandline 属性)
endweight(Bio.Emboss.Applications.NeedleCommandline 属性)
end(Bio.SeqFeature.CompoundLocation 属性)
end(Bio.SeqFeature.FeatureLocation 属性)
Entity(Bio.PDB.Entity 中的类)
entrez_query(Bio.Blast.Applications.NcbiblastnCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbiblastpCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbiblastxCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbideltablastCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbitblastnCommandline 属性)
entrez_query(Bio.Blast.Applications.NcbitblastxCommandline 属性)
entry()(在 Bio.TogoWS 模块中)
entry1(Bio.KEGG.KGML.KGML_pathway.Relation 属性)
entry2(Bio.KEGG.KGML.KGML_pathway.Relation 属性)
Entry(Bio.KEGG.KGML.KGML_pathway 中的类)
entry(Bio.KEGG.KGML.KGML_pathway.Reaction 属性)
enumerate_atoms()(在 Bio.PDB.PICIO 模块中)
epost()(在 Bio.Entrez 模块中)
epsilon(Bio.Phylo.Applications.RaxmlCommandline 属性)
ep(Bio.Align.Applications.MafftCommandline 属性)
equal_weight()(在 Bio.kNN 模块中)
errorfile(Bio.Emboss.Applications.NeedleallCommandline 属性)
error(Bio.Emboss.Applications.DiffseqCommandline 属性)
error(Bio.Emboss.Applications.EInvertedCommandline 属性)
error(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
error(Bio.Emboss.Applications.ETandemCommandline 属性)
error(Bio.Emboss.Applications.FConsenseCommandline 属性)
error(Bio.Emboss.Applications.FDNADistCommandline 属性)
error(Bio.Emboss.Applications.FDNAParsCommandline 属性)
error(Bio.Emboss.Applications.FNeighborCommandline 属性)
error(Bio.Emboss.Applications.FProtDistCommandline 属性)
error(Bio.Emboss.Applications.FProtParsCommandline 属性)
error(Bio.Emboss.Applications.FSeqBootCommandline 属性)
error(Bio.Emboss.Applications.FTreeDistCommandline 属性)
error(Bio.Emboss.Applications.FuzznucCommandline 属性)
error(Bio.Emboss.Applications.FuzzproCommandline 属性)
error(Bio.Emboss.Applications.IepCommandline 属性)
error(Bio.Emboss.Applications.NeedleallCommandline 属性)
error(Bio.Emboss.Applications.NeedleCommandline 属性)
error(Bio.Emboss.Applications.PalindromeCommandline 属性)
error(Bio.Emboss.Applications.Primer3Commandline 属性)
error(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
error(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
error(Bio.Emboss.Applications.SeqretCommandline 属性)
error(Bio.Emboss.Applications.StretcherCommandline 属性)
error(Bio.Emboss.Applications.TranalignCommandline 属性)
error(Bio.Emboss.Applications.WaterCommandline 属性)
esearch()(在 Bio.Entrez 模块中)
espell()(在 Bio.Entrez 模块中)
Est2GenomeCommandline(Bio.Emboss.Applications 中的类)
estimate_nm() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
estimate_nm() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
estimate_params() (Bio.HMM.Trainer.AbstractTrainer 方法)
est(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
esummary()(在 Bio.Entrez 模块中)
ETandemCommandline(Bio.Emboss.Applications 中的类)
evalue(Bio.Blast.Applications.NcbiblastnCommandline 属性)
evalue(Bio.Blast.Applications.NcbiblastpCommandline 属性)
evalue(Bio.Blast.Applications.NcbiblastxCommandline 属性)
evalue(Bio.Blast.Applications.NcbideltablastCommandline 属性)
evalue(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
evalue(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
evalue(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
evalue(Bio.Blast.Applications.NcbitblastnCommandline 属性)
evalue(Bio.Blast.Applications.NcbitblastxCommandline 属性)
events() (Bio.Phylo.PhyloXMLIO.Parser 方法)
events() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Events(Bio.Phylo.PhyloXML 中的类)
ExactPosition(Bio.SeqFeature 中的类)
exclude_filename(Bio.Phylo.Applications.RaxmlCommandline 属性)
excludedregion(Bio.Emboss.Applications.Primer3Commandline 属性)
execute() (BioSQL.BioSeqDatabase.Adaptor 方法)
execute() (BioSQL.DBUtils.Generic_dbutils 方法)
execute() (BioSQL.DBUtils.Sqlite_dbutils 方法)
execute_and_fetch_col0() (BioSQL.BioSeqDatabase.Adaptor 方法)
execute_and_fetch_col0() (BioSQL.BioSeqDatabase.MysqlConnectorAdaptor 方法)
execute_and_fetchall() (BioSQL.BioSeqDatabase.Adaptor 方法)
execute_and_fetchall() (BioSQL.BioSeqDatabase.MysqlConnectorAdaptor 方法)
execute_one() (BioSQL.BioSeqDatabase.Adaptor 方法)
execute_one() (BioSQL.BioSeqDatabase.MysqlConnectorAdaptor 方法)
executemany() (BioSQL.BioSeqDatabase.Adaptor 方法)
executemany() (BioSQL.DBUtils.Generic_dbutils 方法)
executemany() (BioSQL.DBUtils.Sqlite_dbutils 方法)
ExonerateCigarIndexer(Bio.SearchIO.ExonerateIO.exonerate_cigar 中的类)
ExonerateCigarParser(Bio.SearchIO.ExonerateIO.exonerate_cigar 中的类)
ExonerateTextIndexer(Bio.SearchIO.ExonerateIO.exonerate_text 中的类)
ExonerateTextParser(Bio.SearchIO.ExonerateIO.exonerate_text 中的类)
ExonerateVulgarIndexer(Bio.SearchIO.ExonerateIO.exonerate_vulgar 中的类)
ExonerateVulgarParser(Bio.SearchIO.ExonerateIO.exonerate_vulgar 中的类)
expert(Bio.Phylo.Applications.FastTreeCommandline 属性)
explainflag(Bio.Emboss.Applications.Primer3Commandline 属性)
export_fasta() (Bio.Nexus.Nexus.Nexus 方法)
export_phylip() (Bio.Nexus.Nexus.Nexus 方法)
export_search_strategy(Bio.Blast.Applications.NcbiblastnCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbiblastpCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbiblastxCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbideltablastCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbitblastnCommandline 属性)
export_search_strategy(Bio.Blast.Applications.NcbitblastxCommandline 属性)
ExposureCN(Bio.PDB.HSExposure 中的类)
extend() (Bio.Align.MultipleSeqAlignment 方法)
extend() (Bio.SCOP.Raf.SeqMap 方法)
extend() (Bio.Seq.MutableSeq 方法)
extension(Bio.SeqFeature.AfterPosition 属性)
extension(Bio.SeqFeature.BeforePosition 属性)
extension(Bio.SeqFeature.BetweenPosition 属性)
extension(Bio.SeqFeature.ExactPosition 属性)
extension(Bio.SeqFeature.OneOfPosition 属性)
extension(Bio.SeqFeature.UnknownPosition 属性)
extension(Bio.SeqFeature.WithinPosition 属性)
externalEntityRefHandler() (Bio.Entrez.Parser.DataHandler 方法)
extract() (Bio.SeqFeature.CompoundLocation 方法)
extract() (Bio.SeqFeature.FeatureLocation 方法)
extract() (Bio.SeqFeature.SeqFeature 方法)
extract()(在 Bio.PDB.Dice 模块中)
E(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
e(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
E(Bio.Sequencing.Applications.BwaMemCommandline 属性)
E(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
e(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
E(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
e(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
F
fast_bam(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
fast_bam(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
FastaIterator(Bio.SeqIO.FastaIO 中的类)
FastaM10Indexer(Bio.SearchIO.FastaIO 中的类)
FastaM10Iterator()(在 Bio.AlignIO.FastaIO 模块中)
FastaM10Parser(Bio.SearchIO.FastaIO 中的类)
fastaout(Bio.Align.Applications.MuscleCommandline 属性)
fastapair(Bio.Align.Applications.MafftCommandline 属性)
fastaparttree(Bio.Align.Applications.MafftCommandline 属性)
FastaTwoLineIterator(Bio.SeqIO.FastaIO 中的类)
FastaTwoLineParser()(在 Bio.SeqIO.FastaIO 模块中)
FastaTwoLineWriter(Bio.SeqIO.FastaIO 中的类)
FastaWriter(Bio.SeqIO.FastaIO 中的类)
fasta(Bio.Align.Applications.MuscleCommandline 属性)
fastest(Bio.Phylo.Applications.FastTreeCommandline 属性)
FastMMCIFParser(Bio.PDB.MMCIFParser 中的类)
FastqGeneralIterator()(在 Bio.SeqIO.QualityIO 模块中)
FastqIlluminaIterator()(在 Bio.SeqIO.QualityIO 模块中)
FastqIlluminaWriter(Bio.SeqIO.QualityIO 中的类)
FastqPhredIterator(Bio.SeqIO.QualityIO 中的类)
FastqPhredWriter(Bio.SeqIO.QualityIO 中的类)
FastqSolexaIterator()(在 Bio.SeqIO.QualityIO 模块中)
FastqSolexaWriter(Bio.SeqIO.QualityIO 中的类)
FastTreeCommandline(Bio.Phylo.Applications 中的类)
fa(Bio.Align.Applications.DialignCommandline 属性)
FConsenseCommandline(Bio.Emboss.Applications 中的类)
FDNADistCommandline(Bio.Emboss.Applications 中的类)
FDNAParsCommandline(Bio.Emboss.Applications 中的类)
FEATURE_END_MARKERS(Bio.GenBank.Scanner.EmblScanner 属性)
FEATURE_END_MARKERS(Bio.GenBank.Scanner.GenBankScanner 属性)
FEATURE_END_MARKERS(Bio.GenBank.Scanner.InsdcScanner 属性)
FEATURE_HEADER(Bio.SeqIO.InsdcIO.EmblWriter 属性)
FEATURE_HEADER(Bio.SeqIO.InsdcIO.ImgtWriter 属性)
FEATURE_QUALIFIER_INDENT(Bio.GenBank.Scanner.EmblScanner 属性)
FEATURE_QUALIFIER_INDENT(Bio.GenBank.Scanner.GenBankScanner 属性)
FEATURE_QUALIFIER_INDENT(Bio.GenBank.Scanner.InsdcScanner 属性)
FEATURE_QUALIFIER_SPACER(Bio.GenBank.Scanner.EmblScanner 属性)
FEATURE_QUALIFIER_SPACER(Bio.GenBank.Scanner.GenBankScanner 属性)
FEATURE_QUALIFIER_SPACER(Bio.GenBank.Scanner.InsdcScanner 属性)
FEATURE_START_MARKERS(Bio.GenBank.Scanner.EmblScanner 属性)
FEATURE_START_MARKERS(Bio.GenBank.Scanner.GenBankScanner 属性)
FEATURE_START_MARKERS(Bio.GenBank.Scanner.InsdcScanner 属性)
FeatureLocation(Bio.SeqFeature 中的类)
FeatureParser(Bio.GenBank 中的类)
features(BioSQL.BioSeq.DBSeqRecord 属性)
FeatureTable(Bio.SwissProt 中的类)
FeatureValueCleaner(Bio.GenBank.utils 中的类)
Feature(Bio.GenBank.Record 中的类)
feed() (Bio.ExPASy.ScanProsite.Parser 方法)
feed() (Bio.GenBank.Scanner.InsdcScanner 方法)
fetch_dbid_by_dbname() (BioSQL.BioSeqDatabase.Adaptor 方法)
fetch_motif_by_id() (Bio.motifs.jaspar.db.JASPAR5 方法)
fetch_motifs() (Bio.motifs.jaspar.db.JASPAR5 方法)
fetch_motifs_by_name() (Bio.motifs.jaspar.db.JASPAR5 方法)
fetch_seqid_by_accession() (BioSQL.BioSeqDatabase.Adaptor 方法)
fetch_seqid_by_display_id() (BioSQL.BioSeqDatabase.Adaptor 方法)
fetch_seqid_by_identifier() (BioSQL.BioSeqDatabase.Adaptor 方法)
fetch_seqid_by_version() (BioSQL.BioSeqDatabase.Adaptor 方法)
fetch_seqids_by_accession() (BioSQL.BioSeqDatabase.Adaptor 方法)
fft(Bio.Align.Applications.MafftCommandline 属性)
ff(Bio.Align.Applications.DialignCommandline 属性)
fgcolor(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
fieldNames(Bio.PDB.internal_coords.AtomKey 属性)
fields(Bio.PDB.internal_coords.AtomKey 属性)
fileno() (Bio.bgzf.BgzfReader 方法)
fileno() (Bio.bgzf.BgzfWriter 方法)
FileRecord(Bio.PopGen.GenePop.FileParser 中的类)
filtering_db(Bio.Blast.Applications.NcbiblastnCommandline 属性)
filter(Bio.Emboss.Applications.DiffseqCommandline 属性)
filter(Bio.Emboss.Applications.EInvertedCommandline 属性)
filter(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
filter(Bio.Emboss.Applications.ETandemCommandline 属性)
filter(Bio.Emboss.Applications.FConsenseCommandline 属性)
filter(Bio.Emboss.Applications.FDNADistCommandline 属性)
filter(Bio.Emboss.Applications.FDNAParsCommandline 属性)
filter(Bio.Emboss.Applications.FNeighborCommandline 属性)
filter(Bio.Emboss.Applications.FProtDistCommandline 属性)
filter(Bio.Emboss.Applications.FProtParsCommandline 属性)
filter(Bio.Emboss.Applications.FSeqBootCommandline 属性)
filter(Bio.Emboss.Applications.FTreeDistCommandline 属性)
filter(Bio.Emboss.Applications.FuzznucCommandline 属性)
filter(Bio.Emboss.Applications.FuzzproCommandline 属性)
filter(Bio.Emboss.Applications.IepCommandline 属性)
filter(Bio.Emboss.Applications.NeedleallCommandline 属性)
filter(Bio.Emboss.Applications.NeedleCommandline 属性)
filter(Bio.Emboss.Applications.PalindromeCommandline 属性)
filter(Bio.Emboss.Applications.Primer3Commandline 属性)
filter(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
filter(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
filter(Bio.Emboss.Applications.SeqretCommandline 属性)
filter(Bio.Emboss.Applications.StretcherCommandline 属性)
filter(Bio.Emboss.Applications.TranalignCommandline 属性)
filter(Bio.Emboss.Applications.WaterCommandline 属性)
find() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
find_any() (Bio.Phylo.BaseTree.TreeMixin 方法)
find_clades() (Bio.Phylo.BaseTree.TreeMixin 方法)
find_elements() (Bio.Phylo.BaseTree.TreeMixin 方法)
find_start() (Bio.GenBank.Scanner.InsdcScanner 方法)
find_states()(在 Bio.MarkovModel 模块中)
fit() (Bio.phenotype.phen_micro.WellRecord 方法)
fit()(在 Bio.phenotype.pm_fitting 模块中)
fixedbranches(Bio.Align.Applications.PrankCommandline 属性)
flag_disorder() (Bio.PDB.Atom.Atom 方法)
flag_disordered() (Bio.PDB.Residue.Residue 方法)
flexibility() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
flush() (Bio.bgzf.BgzfWriter 方法)
fmodel(Bio.Align.Applications.MafftCommandline 属性)
fmt_()(在 Bio.Blast.Record 模块中)
FNeighborCommandline(Bio.Emboss.Applications 中的类)
fn(Bio.Align.Applications.DialignCommandline 属性)
fop(Bio.Align.Applications.DialignCommandline 属性)
force(Bio.Align.Applications.ClustalOmegaCommandline 属性)
format() (Bio.Align.PairwiseAlignment 方法)
format() (Bio.Align.substitution_matrices.Array 方法)
format() (Bio.motifs.Motif 方法)
format() (Bio.Phylo.BaseTree.Tree 方法)
format() (Bio.SeqRecord.SeqRecord 方法)
format_alignment()(在 Bio.pairwise2 模块中)
format_output() (Bio.Restriction.PrintFormat.PrintFormat 方法)
format_phylip() (Bio.Phylo.TreeConstruction.DistanceMatrix 方法)
format(Bio.Sequencing.Applications.NovoalignCommandline 属性)
forward_algorithm() (Bio.HMM.DynamicProgramming.AbstractDPAlgorithms 方法)
forward_table(Bio.Data.CodonTable.CodonTable 属性)
forwardinput(Bio.Emboss.Applications.Primer3Commandline 属性)
FProtDistCommandline(Bio.Emboss.Applications 中的类)
FProtParsCommandline(Bio.Emboss.Applications 中的类)
fracsample(Bio.Emboss.Applications.FSeqBootCommandline 属性)
FragmentMapper(Bio.PDB.FragmentMapper 中的类)
Fragment(Bio.PDB.FragmentMapper 中的类)
fragment(Bio.Sequencing.Applications.NovoalignCommandline 属性)
frame_shift_penalty(Bio.Blast.Applications.NcbiblastxCommandline 属性)
frame_shift_penalty(Bio.Blast.Applications.NcbitblastnCommandline 属性)
freqsfrom(Bio.Emboss.Applications.FDNADistCommandline 属性)
frequencies(Bio.Phylo.Applications.PhymlCommandline 属性)
FrequencyPositionMatrix(Bio.motifs.matrix 中的类)
from_clade()(Bio.Phylo.BaseTree.Tree 类方法)
from_clade()(Bio.Phylo.PhyloXML.Clade 类方法)
from_clade()(Bio.Phylo.PhyloXML.Phylogeny 类方法)
from_hex()(Bio.Phylo.BaseTree.BranchColor 类方法)
from_msa()(Bio.codonalign.codonalignment.CodonAlignment 类方法)
from_name()(Bio.Phylo.BaseTree.BranchColor 类方法)
from_seq()(Bio.codonalign.codonseq.CodonSeq 类方法)
from_seqfeature()(Bio.Phylo.PhyloXML.ProteinDomain 类方法)
from_seqrecord()(Bio.Phylo.PhyloXML.Sequence 类方法)
from_string()(Bio.Phylo.NewickIO.Parser 类方法)
from_string()(Bio.Phylo.NeXMLIO.Parser 类方法)
from_tree()(Bio.Phylo.PhyloXML.Phylogeny 类方法)
FSeqBootCommandline(Bio.Emboss.Applications 中的类)
fsm(Bio.Align.Applications.DialignCommandline 属性)
FTreeDistCommandline(Bio.Emboss.Applications 中的类)
full_translate() (Bio.codonalign.codonseq.CodonSeq 方法)
fullhelp(Bio.Align.Applications.ClustalwCommandline 属性)
FuzznucCommandline(Bio.Emboss.Applications 中的类)
FuzzproCommandline(Bio.Emboss.Applications 中的类)
F(Bio.Align.Applications.PrankCommandline 属性)
f(Bio.Align.Applications.PrankCommandline 属性)
f(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
f(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
F(Bio.Sequencing.Applications.SamtoolsPhaseCommandline 属性)
f(Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 属性)
F(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
f(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
G
gafbyproteiniterator()(在 Bio.UniProt.GOA 模块中)
gafiterator()(在 Bio.UniProt.GOA 模块中)
gammacoefficient(Bio.Emboss.Applications.FDNADistCommandline 属性)
gammacoefficient(Bio.Emboss.Applications.FProtDistCommandline 属性)
gamma(Bio.Emboss.Applications.FDNADistCommandline 属性)
gamma(Bio.Emboss.Applications.FProtDistCommandline 属性)
gamma(Bio.Phylo.Applications.FastTreeCommandline 属性)
gap_consensus() (Bio.Align.AlignInfo.SummaryInfo 方法)
gap_extend(Bio.Sequencing.Applications.NovoalignCommandline 属性)
gap_open(Bio.Sequencing.Applications.NovoalignCommandline 属性)
gap_trigger(Bio.Blast.Applications.NcbideltablastCommandline 属性)
gap_trigger(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
gapdist(Bio.Align.Applications.ClustalwCommandline 属性)
gapextend(Bio.Align.Applications.MuscleCommandline 属性)
gapextend(Bio.Blast.Applications.NcbiblastnCommandline 属性)
gapextend(Bio.Blast.Applications.NcbiblastpCommandline 属性)
gapextend(Bio.Blast.Applications.NcbiblastxCommandline 属性)
gapextend(Bio.Blast.Applications.NcbideltablastCommandline 属性)
gapextend(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
gapextend(Bio.Blast.Applications.NcbitblastnCommandline 属性)
gapextend(Bio.Blast.Applications.NcbitblastxCommandline 属性)
gapextend(Bio.Emboss.Applications.NeedleallCommandline 属性)
gapextend(Bio.Emboss.Applications.NeedleCommandline 属性)
gapextend(Bio.Emboss.Applications.StretcherCommandline 属性)
gapextend(Bio.Emboss.Applications.WaterCommandline 属性)
gapext(Bio.Align.Applications.ClustalwCommandline 属性)
gapext(Bio.Align.Applications.PrankCommandline 属性)
gapext(Bio.Align.Applications.TCoffeeCommandline 属性)
gaplimit(Bio.Emboss.Applications.PalindromeCommandline 属性)
gaponly() (Bio.Nexus.Nexus.Nexus 方法)
gapopen(Bio.Align.Applications.ClustalwCommandline 属性)
gapopen(Bio.Align.Applications.MuscleCommandline 属性)
gapopen(Bio.Align.Applications.TCoffeeCommandline 属性)
gapopen(Bio.Blast.Applications.NcbiblastnCommandline 属性)
gapopen(Bio.Blast.Applications.NcbiblastpCommandline 属性)
gapopen(Bio.Blast.Applications.NcbiblastxCommandline 属性)
gapopen(Bio.Blast.Applications.NcbideltablastCommandline 属性)
gapopen(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
gapopen(Bio.Blast.Applications.NcbitblastnCommandline 属性)
gapopen(Bio.Blast.Applications.NcbitblastxCommandline 属性)
gapopen(Bio.Emboss.Applications.NeedleallCommandline 属性)
gapopen(Bio.Emboss.Applications.NeedleCommandline 属性)
gapopen(Bio.Emboss.Applications.StretcherCommandline 属性)
gapopen(Bio.Emboss.Applications.WaterCommandline 属性)
gappenalty(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
gaprate(Bio.Align.Applications.PrankCommandline 属性)
gap(Bio.Emboss.Applications.EInvertedCommandline 属性)
GB_BASE_INDENT(Bio.GenBank.Record.Record 属性)
GB_FEATURE_INDENT(Bio.GenBank.Record.Record 属性)
GB_FEATURE_INTERNAL_INDENT(Bio.GenBank.Record.Record 属性)
GB_INTERNAL_INDENT(Bio.GenBank.Record.Record 属性)
GB_LINE_LENGTH(Bio.GenBank.Record.Record 属性)
GB_OTHER_INTERNAL_INDENT(Bio.GenBank.Record.Record 属性)
GB_SEQUENCE_INDENT(Bio.GenBank.Record.Record 属性)
GC()(在 Bio.SeqUtils 模块中)
GC123()(在 Bio.SeqUtils 模块中)
gc_content(Bio.motifs.matrix.GenericPositionMatrix 属性)
gc_content(Bio.motifs.matrix.PositionSpecificScoringMatrix 属性)
GC_skew()(在 Bio.SeqUtils 模块中)
gcclamp(Bio.Emboss.Applications.Primer3Commandline 属性)
gcg()(在 Bio.SeqUtils.CheckSum 模块中)
GckIterator(Bio.SeqIO.GckIO 中的类)
gen_acs() (Bio.PDB.internal_coords.Edron 方法)
gen_key()(Bio.PDB.internal_coords.Edron 静态方法)
genafpair(Bio.Align.Applications.MafftCommandline 属性)
GENBANK_INDENT(Bio.GenBank.Scanner.GenBankScanner 属性)
GENBANK_SPACER(Bio.GenBank.Scanner.GenBankScanner 属性)
GenBankCdsFeatureIterator(Bio.SeqIO.InsdcIO 中的类)
GenBankIterator(Bio.SeqIO.InsdcIO 中的类)
GenBankScanner(Bio.GenBank.Scanner 中的类)
GenBankWriter(Bio.SeqIO.InsdcIO 中的类)
GenePopController(Bio.PopGen.GenePop.Controller 中的类)
generate_index() (Bio.SeqUtils.CodonUsage.CodonAdaptationIndex 方法)
Generic_dbutils(BioSQL.DBUtils 中的类)
GenericPositionMatrix(Bio.motifs.matrix 中的类)
genes(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
genome(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
get() (Bio.Align.substitution_matrices.Array 方法)
get() (Bio.Data.CodonTable.AmbiguousForwardTable 方法)
get_acgt() (Bio.motifs.xms.XMSScanner 方法)
get_alignment_length() (Bio.Align.MultipleSeqAlignment 方法)
get_all_entries() (Bio.PDB.PDBList.PDBList 方法)
get_all_obsolete() (Bio.PDB.PDBList.PDBList 方法)
get_allele_frequency() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_alleles() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_alleles_all_pops() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_aln_length() (Bio.codonalign.codonalignment.CodonAlignment 方法)
get_altloc() (Bio.PDB.Atom.Atom 方法)
get_amino_acids_percent() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
get_angle() (Bio.PDB.internal_coords.IC_Residue 方法)
get_anisou() (Bio.PDB.Atom.Atom 方法)
get_area()(在 Bio.phenotype.pm_fitting 模块中)
get_array() (Bio.PDB.vectors.Vector 方法)
get_atoms() (Bio.PDB.Chain.Chain 方法)
get_atoms() (Bio.PDB.Model.Model 方法)
get_atoms() (Bio.PDB.Residue.Residue 方法)
get_atoms() (Bio.PDB.Structure.Structure 方法)
get_avg_fis() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_avg_fst_pair() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_avg_fst_pair_locus() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_basic_info() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_bfactor() (Bio.PDB.Atom.Atom 方法)
get_blank_emissions() (Bio.HMM.MarkovModel.HiddenMarkovModel 方法)
get_blank_transitions() (Bio.HMM.MarkovModel.HiddenMarkovModel 方法)
get_ca_list() (Bio.PDB.Polypeptide.Polypeptide 方法)
get_chains() (Bio.PDB.Model.Model 方法)
get_chains() (Bio.PDB.Structure.Structure 方法)
get_charge() (Bio.PDB.Atom.Atom 方法)
get_codon() (Bio.codonalign.codonseq.CodonSeq 方法)
get_codon_num() (Bio.codonalign.codonseq.CodonSeq 方法)
get_column() (Bio.Align.AlignInfo.SummaryInfo 方法)
get_column() (Bio.phenotype.phen_micro.PlateRecord 方法)
get_coord() (Bio.PDB.Atom.Atom 方法)
get_coords() (Bio.PDB.FragmentMapper.Fragment 方法)
get_data() (Bio.Nexus.Nodes.Node 方法)
get_dbutils()(在 BioSQL.DBUtils 模块中)
get_distance() (Bio.Phylo.TreeConstruction.DistanceCalculator 方法)
get_dn_ds_matrix() (Bio.codonalign.codonalignment.CodonAlignment 方法)
get_dn_ds_tree() (Bio.codonalign.codonalignment.CodonAlignment 方法)
get_f_stats() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_fis() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_full_id() (Bio.PDB.Atom.Atom 方法)
get_full_id() (Bio.PDB.Entity.Entity 方法)
get_full_rf_table() (Bio.codonalign.codonseq.CodonSeq 方法)
get_fullname() (Bio.PDB.Atom.Atom 方法)
get_genotype_count() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_header() (Bio.PDB.PDBParser.PDBParser 方法)
get_heterozygosity_info() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_id() (Bio.Nexus.Nodes.Node 方法)
get_id() (Bio.PDB.Atom.Atom 方法)
get_id() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
get_id() (Bio.PDB.Entity.Entity 方法)
get_id() (Bio.PDB.FragmentMapper.Fragment 方法)
get_indiv()(在 Bio.PopGen.GenePop 模块中)
get_indiv()(在 Bio.PopGen.GenePop.LargeFileParser 模块中)
get_individual() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
get_init_rms() (Bio.PDB.QCPSuperimposer.QCPSuperimposer 方法)
get_init_rms() (Bio.SVDSuperimposer.SVDSuperimposer 方法)
get_iterator() (Bio.PDB.Entity.Entity 方法)
get_iterator() (Bio.PDB.StructureAlignment.StructureAlignment 方法)
get_KGML() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
get_length() (Bio.PDB.internal_coords.Hedron 方法)
get_length() (Bio.PDB.internal_coords.IC_Residue 方法)
get_level() (Bio.PDB.Atom.Atom 方法)
get_level() (Bio.PDB.Entity.Entity 方法)
get_list() (Bio.PDB.Entity.Entity 方法)
get_maps() (Bio.PDB.StructureAlignment.StructureAlignment 方法)
get_markov_model() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
get_models() (Bio.PDB.Structure.Structure 方法)
get_multilocus_f_stats() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
get_name() (Bio.PDB.Atom.Atom 方法)
get_nonterminals() (Bio.Phylo.BaseTree.TreeMixin 方法)
get_occupancy() (Bio.PDB.Atom.Atom 方法)
get_original_taxon_order() (Bio.Nexus.Nexus.Nexus 方法)
get_parent() (Bio.PDB.Atom.Atom 方法)
get_parent() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
get_parent() (Bio.PDB.Entity.Entity 方法)
get_path() (Bio.Phylo.BaseTree.TreeMixin 方法)
get_phi_psi_list() (Bio.PDB.Polypeptide.Polypeptide 方法)
get_prev() (Bio.Nexus.Nodes.Node 方法)
get_prodoc_entry()(在 Bio.ExPASy 模块中)
get_property_value() (Bio.motifs.xms.XMSScanner 方法)
get_prosite_entry()(在 Bio.ExPASy 模块中)
get_prosite_raw()(在 Bio.ExPASy 模块中)
get_qresult_id() (Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarIndexer 方法)
get_qresult_id() (Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextIndexer 方法)
get_qresult_id() (Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarIndexer 方法)
get_radius() (Bio.PDB.Atom.Atom 方法)
get_raw() (Bio.phenotype.phen_micro.WellRecord 方法)
get_raw() (Bio.SearchIO.BlastIO.blast_tab.BlastTabIndexer 方法)
get_raw() (Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer 方法)
get_raw() (Bio.SearchIO.BlatIO.BlatPslIndexer 方法)
get_raw() (Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextIndexer 方法)
get_raw() (Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarIndexer 方法)
get_raw() (Bio.SearchIO.FastaIO.FastaM10Indexer 方法)
get_raw() (Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabIndexer 方法)
get_recent_changes() (Bio.PDB.PDBList.PDBList 方法)
get_residue() (Bio.Align.AlignInfo.PSSM 方法)
get_residues() (Bio.PDB.Chain.Chain 方法)
get_residues() (Bio.PDB.Model.Model 方法)
get_residues() (Bio.PDB.Structure.Structure 方法)
get_resname() (Bio.PDB.Residue.Residue 方法)
get_resname_list() (Bio.PDB.FragmentMapper.Fragment 方法)
get_rms() (Bio.PDB.QCPSuperimposer.QCPSuperimposer 方法)
get_rms() (Bio.SVDSuperimposer.SVDSuperimposer 方法)
get_rotran() (Bio.PDB.QCPSuperimposer.QCPSuperimposer 方法)
get_rotran() (Bio.SVDSuperimposer.SVDSuperimposer 方法)
get_row() (Bio.phenotype.phen_micro.PlateRecord 方法)
get_score() (Bio.Phylo.TreeConstruction.ParsimonyScorer 方法)
get_score() (Bio.Phylo.TreeConstruction.Scorer 方法)
get_segid() (Bio.PDB.Residue.Residue 方法)
get_seq() (Bio.PDB.PSEA.PSEA 方法)
get_Seq_by_acc() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
get_Seq_by_id() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
get_Seq_by_ver() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
get_seqres_file() (Bio.PDB.PDBList.PDBList 方法)
get_Seqs_by_acc() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
get_sequence() (Bio.PDB.Polypeptide.Polypeptide 方法)
get_serial_number() (Bio.PDB.Atom.Atom 方法)
get_sigatm() (Bio.PDB.Atom.Atom 方法)
get_signals() (Bio.phenotype.phen_micro.WellRecord 方法)
get_siguij() (Bio.PDB.Atom.Atom 方法)
get_spherical_coordinates()(在 Bio.PDB.vectors 模块中)
get_spliced() (Bio.AlignIO.MafIO.MafIndex 方法)
get_sprot_raw()(在 Bio.ExPASy 模块中)
get_start_end()(在 Bio.Nexus.Nexus 模块中)
get_startpos() (Bio.PDB.internal_coords.IC_Residue 方法)
get_status_list()(Bio.PDB.PDBList.PDBList 静态方法)
get_structure() (Bio.PDB.MMCIFParser.FastMMCIFParser 方法)
get_structure() (Bio.PDB.MMCIFParser.MMCIFParser 方法)
get_structure() (Bio.PDB.PDBParser.PDBParser 方法)
get_structure() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
get_subseq_as_string() (BioSQL.BioSeqDatabase.Adaptor 方法)
get_succ() (Bio.Nexus.Nodes.Node 方法)
get_support()(在 Bio.Phylo.Consensus 模块中)
get_surface()(在 Bio.PDB.ResidueDepth 模块中)
get_tau_list() (Bio.PDB.Polypeptide.Polypeptide 方法)
get_taxa() (Bio.Nexus.Trees.Tree 方法)
get_terminals() (Bio.Nexus.Trees.Tree 方法)
get_terminals() (Bio.Phylo.BaseTree.TreeMixin 方法)
get_text() (Bio.motifs.xms.XMSScanner 方法)
get_theta_list() (Bio.PDB.Polypeptide.Polypeptide 方法)
get_times() (Bio.phenotype.phen_micro.WellRecord 方法)
get_trailer() (Bio.PDB.PDBParser.PDBParser 方法)
get_transformed() (Bio.PDB.QCPSuperimposer.QCPSuperimposer 方法)
get_transformed() (Bio.SVDSuperimposer.SVDSuperimposer 方法)
get_unique_parents()(在 Bio.PDB.Selection 模块中)
get_unpacked_list() (Bio.PDB.Chain.Chain 方法)
get_unpacked_list() (Bio.PDB.Residue.Residue 方法)
get_vector() (Bio.PDB.Atom.Atom 方法)
getAscendent() (Bio.SCOP.Node 方法)
getAscendentFromSQL() (Bio.SCOP.Scop 方法)
getAstralDomainsFromFile() (Bio.SCOP.Astral 方法)
getAstralDomainsFromSQL() (Bio.SCOP.Astral 方法)
getAtoms() (Bio.SCOP.Raf.SeqMap 方法)
getChildren() (Bio.SCOP.Node 方法)
getDescendents() (Bio.SCOP.Node 方法)
getDescendentsFromSQL() (Bio.SCOP.Scop 方法)
getDomainBySid() (Bio.SCOP.Scop 方法)
getDomainFromSQL() (Bio.SCOP.Scop 方法)
getDomains() (Bio.SCOP.Scop 方法)
getNodeBySunid() (Bio.SCOP.Scop 方法)
getParent() (Bio.SCOP.Node 方法)
getRoot() (Bio.SCOP.Scop 方法)
getSeq() (Bio.SCOP.Astral 方法)
getSeqBySid() (Bio.SCOP.Astral 方法)
getSeqMap() (Bio.SCOP.Raf.SeqMapIndex 方法)
gi_mask_name(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
gi_mask(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
gilist(Bio.Blast.Applications.NcbiblastnCommandline 属性)
gilist(Bio.Blast.Applications.NcbiblastpCommandline 属性)
gilist(Bio.Blast.Applications.NcbiblastxCommandline 属性)
gilist(Bio.Blast.Applications.NcbideltablastCommandline 属性)
gilist(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
gilist(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
gilist(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
gilist(Bio.Blast.Applications.NcbitblastnCommandline 属性)
gilist(Bio.Blast.Applications.NcbitblastxCommandline 属性)
global_dtd_dir(Bio.Entrez.Parser.DataHandler 属性)
global_xsd_dir(Bio.Entrez.Parser.DataHandler 属性)
globalpair(Bio.Align.Applications.MafftCommandline 属性)
gly_Cbeta(Bio.PDB.internal_coords.IC_Residue 属性)
gompertz()(在 Bio.phenotype.pm_fitting 模块中)
good_bases(Bio.Sequencing.Applications.NovoalignCommandline 属性)
gpa_iterator()(在 Bio.UniProt.GOA 模块中)
gpi_iterator()(在 Bio.UniProt.GOA 模块中)
Graphics(Bio.KEGG.KGML.KGML_pathway 中的类)
Graph(Bio.Pathway.Rep.Graph 中的类)
gravy() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
green() (Bio.Phylo.PhyloXMLIO.Writer 方法)
grouping_constraint(Bio.Phylo.Applications.RaxmlCommandline 属性)
groupsize(Bio.Align.Applications.MafftCommandline 属性)
group(Bio.Align.Applications.MuscleCommandline 属性)
gtrfreq(Bio.Phylo.Applications.FastTreeCommandline 属性)
gtrrates(Bio.Phylo.Applications.FastTreeCommandline 属性)
gtr(Bio.Phylo.Applications.FastTreeCommandline 属性)
guess_lag()(在 Bio.phenotype.pm_fitting 模块中)
guess_plateau()(在 Bio.phenotype.pm_fitting 模块中)
guidetree_in(Bio.Align.Applications.ClustalOmegaCommandline 属性)
guidetree_out(Bio.Align.Applications.ClustalOmegaCommandline 属性)
g(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
H
handle_motif() (Bio.motifs.xms.XMSScanner 方法)
handleMissingDocumentDefinition() (Bio.Entrez.Parser.DataHandler 方法)
has_id() (Bio.PDB.Chain.Chain 方法)
has_id() (Bio.PDB.Entity.Entity 方法)
has_support() (Bio.Nexus.Trees.Tree 方法)
hash_index(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
hashedDomainsByEv() (Bio.SCOP.Astral 方法)
hashedDomainsById() (Bio.SCOP.Astral 方法)
HEADER_WIDTH(Bio.GenBank.Scanner.EmblScanner 属性)
HEADER_WIDTH(Bio.GenBank.Scanner.GenBankScanner 属性)
HEADER_WIDTH(Bio.GenBank.Scanner.InsdcScanner 属性)
HEADER_WIDTH(Bio.SeqIO.InsdcIO.EmblWriter 属性)
HEADER_WIDTH(Bio.SeqIO.InsdcIO.GenBankWriter 属性)
HEADER_WIDTH(Bio.SeqIO.InsdcIO.ImgtWriter 属性)
Header(Bio.Blast.Record 中的类)
header(Bio.Wise.dnal.Statistics 属性)
HedronMatchError
Hedron(Bio.PDB.internal_coords 中的类)
height(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
helixendin(Bio.Align.Applications.ClustalwCommandline 属性)
helixendout(Bio.Align.Applications.ClustalwCommandline 属性)
helixgap(Bio.Align.Applications.ClustalwCommandline 属性)
help(Bio.Align.Applications.ClustalOmegaCommandline 属性)
help(Bio.Align.Applications.ClustalwCommandline 属性)
help(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
help(Bio.Blast.Applications.NcbiblastnCommandline 属性)
help(Bio.Blast.Applications.NcbiblastpCommandline 属性)
help(Bio.Blast.Applications.NcbiblastxCommandline 属性)
help(Bio.Blast.Applications.NcbideltablastCommandline 属性)
help(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
help(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
help(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
help(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
help(Bio.Blast.Applications.NcbitblastnCommandline 属性)
help(Bio.Blast.Applications.NcbitblastxCommandline 属性)
help(Bio.Emboss.Applications.DiffseqCommandline 属性)
help(Bio.Emboss.Applications.EInvertedCommandline 属性)
help(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
help(Bio.Emboss.Applications.ETandemCommandline 属性)
help(Bio.Emboss.Applications.FConsenseCommandline 属性)
help(Bio.Emboss.Applications.FDNADistCommandline 属性)
help(Bio.Emboss.Applications.FDNAParsCommandline 属性)
help(Bio.Emboss.Applications.FNeighborCommandline 属性)
help(Bio.Emboss.Applications.FProtDistCommandline 属性)
help(Bio.Emboss.Applications.FProtParsCommandline 属性)
help(Bio.Emboss.Applications.FSeqBootCommandline 属性)
help(Bio.Emboss.Applications.FTreeDistCommandline 属性)
help(Bio.Emboss.Applications.FuzznucCommandline 属性)
help(Bio.Emboss.Applications.FuzzproCommandline 属性)
help(Bio.Emboss.Applications.IepCommandline 属性)
help(Bio.Emboss.Applications.NeedleallCommandline 属性)
help(Bio.Emboss.Applications.NeedleCommandline 属性)
help(Bio.Emboss.Applications.PalindromeCommandline 属性)
help(Bio.Emboss.Applications.Primer3Commandline 属性)
help(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
help(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
help(Bio.Emboss.Applications.SeqretCommandline 属性)
help(Bio.Emboss.Applications.StretcherCommandline 属性)
help(Bio.Emboss.Applications.TranalignCommandline 属性)
help(Bio.Emboss.Applications.WaterCommandline 属性)
help(Bio.Phylo.Applications.FastTreeCommandline 属性)
hgapresidues(Bio.Align.Applications.ClustalwCommandline 属性)
Hhsuite2TextParser(Bio.SearchIO.HHsuiteIO.hhsuite2_text 中的类)
HiddenMarkovModel(Bio.HMM.MarkovModel 中的类)
hit_coverage() (Bio.Compass.Record 方法)
hmm_as_hit(Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitParser 属性)
hmm_as_hit(Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitWriter 属性)
hmm_as_hit(Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmqueryParser 属性)
hmm_as_hit(Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmqueryWriter 属性)
hmm_input(Bio.Align.Applications.ClustalOmegaCommandline 属性)
Hmmer2TextIndexer(Bio.SearchIO.HmmerIO.hmmer2_text 中的类)
Hmmer2TextParser(Bio.SearchIO.HmmerIO.hmmer2_text 中的类)
Hmmer3DomtabHmmhitIndexer(Bio.SearchIO.HmmerIO.hmmer3_domtab 中的类)
Hmmer3DomtabHmmhitParser(Bio.SearchIO.HmmerIO.hmmer3_domtab 中的类)
Hmmer3DomtabHmmhitWriter(Bio.SearchIO.HmmerIO.hmmer3_domtab 中的类)
Hmmer3DomtabHmmqueryIndexer(Bio.SearchIO.HmmerIO.hmmer3_domtab 中的类)
Hmmer3DomtabHmmqueryParser(Bio.SearchIO.HmmerIO.hmmer3_domtab 中的类)
Hmmer3DomtabHmmqueryWriter(Bio.SearchIO.HmmerIO.hmmer3_domtab 中的类)
Hmmer3TabIndexer(Bio.SearchIO.HmmerIO.hmmer3_tab 中的类)
Hmmer3TabParser(Bio.SearchIO.HmmerIO.hmmer3_tab 中的类)
Hmmer3TabWriter(Bio.SearchIO.HmmerIO.hmmer3_tab 中的类)
Hmmer3TextIndexer(Bio.SearchIO.HmmerIO.hmmer3_text 中的类)
Hmmer3TextParser(Bio.SearchIO.HmmerIO.hmmer3_text 中的类)
homog_rot_mtx()(在 Bio.PDB.vectors 模块中)
homog_scale_mtx()(在 Bio.PDB.vectors 模块中)
homog_trans_mtx()(在 Bio.PDB.vectors 模块中)
homopolymer(Bio.Sequencing.Applications.NovoalignCommandline 属性)
HSExposureCA(Bio.PDB.HSExposure 中的类)
HSExposureCB(Bio.PDB.HSExposure 中的类)
HSP(Bio.Blast.Record 中的类)
htmlout(Bio.Align.Applications.MuscleCommandline 属性)
html(Bio.Align.Applications.MuscleCommandline 属性)
html(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
html(Bio.Blast.Applications.NcbiblastnCommandline 属性)
html(Bio.Blast.Applications.NcbiblastpCommandline 属性)
html(Bio.Blast.Applications.NcbiblastxCommandline 属性)
html(Bio.Blast.Applications.NcbideltablastCommandline 属性)
html(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
html(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
html(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
html(Bio.Blast.Applications.NcbitblastnCommandline 属性)
html(Bio.Blast.Applications.NcbitblastxCommandline 属性)
hybridprobe(Bio.Emboss.Applications.Primer3Commandline 属性)
hydrofactor(Bio.Align.Applications.MuscleCommandline 属性)
hydro(Bio.Align.Applications.MuscleCommandline 属性)
h(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
h(Bio.Blast.Applications.NcbiblastnCommandline 属性)
h(Bio.Blast.Applications.NcbiblastpCommandline 属性)
h(Bio.Blast.Applications.NcbiblastxCommandline 属性)
h(Bio.Blast.Applications.NcbideltablastCommandline 属性)
h(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
h(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
h(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
h(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
h(Bio.Blast.Applications.NcbitblastnCommandline 属性)
h(Bio.Blast.Applications.NcbitblastxCommandline 属性)
H(Bio.Sequencing.Applications.BwaMemCommandline 属性)
h(Bio.Sequencing.Applications.SamtoolsCatCommandline 属性)
h(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
h(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
H(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
h(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
I
IC_Chain(Bio.PDB.internal_coords 中的类)
IC_duplicate()(在 Bio.PDB.ic_rebuild 模块中)
IC_Residue(Bio.PDB.internal_coords 中的类)
icode(Bio.PDB.internal_coords.AtomKey.fieldsDef 属性)
id() (Bio.Phylo.PhyloXMLIO.Parser 方法)
id() (Bio.Phylo.PhyloXMLIO.Writer 方法)
id_width(Bio.AlignIO.PhylipIO.PhylipIterator 属性)
identity_fraction() (Bio.Wise.dnal.Statistics 方法)
identity_match(Bio.pairwise2 中的类)
id(Bio.KEGG.KGML.KGML_pathway.Component 属性)
id(Bio.KEGG.KGML.KGML_pathway.Entry 属性)
id(Bio.KEGG.KGML.KGML_pathway.Reaction 属性)
id(Bio.PDB.Entity.Entity 属性)
Id(Bio.Phylo.PhyloXML 中的类)
IepCommandline(Bio.Emboss.Applications 中的类)
IgIterator(Bio.SeqIO.IgIO 中的类)
ignore_msa_master(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
illumina_13(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
ImgtIterator(Bio.SeqIO.InsdcIO 中的类)
ImgtWriter(Bio.SeqIO.InsdcIO 中的类)
import_search_strategy(Bio.Blast.Applications.NcbiblastnCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbiblastpCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbiblastxCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbideltablastCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbitblastnCommandline 属性)
import_search_strategy(Bio.Blast.Applications.NcbitblastxCommandline 属性)
in1(Bio.Align.Applications.MuscleCommandline 属性)
in2(Bio.Align.Applications.MuscleCommandline 属性)
in_bam(Bio.Sequencing.Applications.SamtoolsPhaseCommandline 属性)
in_bam(Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 属性)
in_msa(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
in_pssm(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
in_pssm(Bio.Blast.Applications.NcbitblastnCommandline 属性)
includedregion(Bio.Emboss.Applications.Primer3Commandline 属性)
inclusion_ethresh(Bio.Blast.Applications.NcbideltablastCommandline 属性)
inclusion_ethresh(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
Indent(Bio.Restriction.PrintFormat.PrintFormat 属性)
index() (Bio.SCOP.Raf.SeqMap 方法)
index() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
index()(在 Bio.SearchIO 模块中)
index()(在 Bio.SeqIO 模块中)
index_db()(在 Bio.SearchIO 模块中)
index_db()(在 Bio.SeqIO 模块中)
index_name(Bio.Blast.Applications.NcbiblastnCommandline 属性)
index_to_one()(在 Bio.PDB.Polypeptide 模块中)
index_to_three()(在 Bio.PDB.Polypeptide 模块中)
Index(Bio.SCOP.Cla 中的类)
infile(Bio.Align.Applications.ClustalOmegaCommandline 属性)
infile(Bio.Align.Applications.ClustalwCommandline 属性)
infile(Bio.Align.Applications.MSAProbsCommandline 属性)
infile(Bio.Align.Applications.TCoffeeCommandline 属性)
infile(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
infile(Bio.Sequencing.Applications.BwaIndexCommandline 属性)
infmt(Bio.Align.Applications.ClustalOmegaCommandline 属性)
information_content() (Bio.Align.AlignInfo.SummaryInfo 方法)
init_atom() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
init_atom_coords() (Bio.PDB.internal_coords.IC_Chain 方法)
init_chain() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
init_edra() (Bio.PDB.internal_coords.IC_Chain 方法)
init_model() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
init_residue() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
init_seg() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
init_structure() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
input1(Bio.Align.Applications.MafftCommandline 属性)
input_bam(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
input_bam(Bio.Sequencing.Applications.SamtoolsIdxstatsCommandline 属性)
input_bam(Bio.Sequencing.Applications.SamtoolsIndexCommandline 属性)
input_file(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
input_file(Bio.Sequencing.Applications.SamtoolsFixmateCommandline 属性)
input_file(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
input_file(Bio.Sequencing.Applications.SamtoolsRmdupCommandline 属性)
input_file(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
input_tree(Bio.Phylo.Applications.PhymlCommandline 属性)
input_type(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
inputorder(Bio.Align.Applications.MafftCommandline 属性)
InputRecord(Bio.Emboss.PrimerSearch 中的类)
input(Bio.Align.Applications.DialignCommandline 属性)
input(Bio.Align.Applications.MafftCommandline 属性)
input(Bio.Align.Applications.MuscleCommandline 属性)
input(Bio.Align.Applications.ProbconsCommandline 属性)
input(Bio.Phylo.Applications.FastTreeCommandline 属性)
input(Bio.Phylo.Applications.PhymlCommandline 属性)
input(Bio.Sequencing.Applications.SamtoolsVersion0xSortCommandline 属性)
input(Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 属性)
InsdcScanner(Bio.GenBank.Scanner 中的类)
insert() (Bio.PDB.Entity.Entity 方法)
insert() (Bio.Seq.MutableSeq 方法)
insert_gap() (Bio.Nexus.Nexus.Nexus 方法)
instability_index() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
Instances(Bio.motifs 中的类)
Instance(Bio.motifs.meme 中的类)
IntegerElement(Bio.Entrez.Parser 中的类)
integers(Bio.ExPASy.ScanProsite.ContentHandler 属性)
interactions() (Bio.Pathway.Network 方法)
Interaction(Bio.Pathway 中的类)
INTERNAL_FEATURE_FORMAT(Bio.GenBank.Record.Record 属性)
INTERNAL_FORMAT(Bio.GenBank.Record.Record 属性)
internal_to_atom_coordinates() (Bio.PDB.Chain.Chain 方法)
internal_to_atom_coordinates() (Bio.PDB.internal_coords.IC_Chain 方法)
internal_to_atom_coordinates() (Bio.PDB.Model.Model 方法)
internal_to_atom_coordinates() (Bio.PDB.Structure.Structure 方法)
InterproscanXmlParser(Bio.SearchIO.InterproscanIO.interproscan_xml 中的类)
intree1(Bio.Phylo.Applications.FastTreeCommandline 属性)
intreefile(Bio.Emboss.Applications.FConsenseCommandline 属性)
intreefile(Bio.Emboss.Applications.FDNAParsCommandline 属性)
intreefile(Bio.Emboss.Applications.FProtParsCommandline 属性)
intreefile(Bio.Emboss.Applications.FTreeDistCommandline 属性)
intree(Bio.Phylo.Applications.FastTreeCommandline 属性)
intronpenalty(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
invarcoefficient(Bio.Emboss.Applications.FProtDistCommandline 属性)
invarfrac(Bio.Emboss.Applications.FDNADistCommandline 属性)
invert() (Bio.Nexus.Nexus.Nexus 方法)
ir(Bio.Align.Applications.ProbconsCommandline 属性)
is_aa()(在 Bio.PDB.Polypeptide 模块中)
is_backbone() (Bio.PDB.internal_coords.Edron 方法)
is_bifurcating() (Bio.Nexus.Trees.Tree 方法)
is_bifurcating() (Bio.Phylo.BaseTree.TreeMixin 方法)
is_compatible() (Bio.Nexus.Trees.Tree 方法)
is_disordered() (Bio.PDB.Atom.Atom 方法)
is_disordered() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
is_disordered() (Bio.PDB.Residue.Residue 方法)
is_identical() (Bio.Nexus.Trees.Tree 方法)
is_internal() (Bio.Nexus.Trees.Tree 方法)
is_monophyletic() (Bio.Nexus.Trees.Tree 方法)
is_monophyletic() (Bio.Phylo.BaseTree.TreeMixin 方法)
is_parent_of() (Bio.Nexus.Nodes.Chain 方法)
is_parent_of() (Bio.Phylo.BaseTree.TreeMixin 方法)
is_preterminal() (Bio.Nexus.Trees.Tree 方法)
is_preterminal() (Bio.Phylo.BaseTree.TreeMixin 方法)
is_reactant(Bio.KEGG.KGML.KGML_pathway.Entry 属性)
is_terminal() (Bio.Nexus.Trees.Tree 方法)
is_terminal() (Bio.Phylo.BaseTree.Clade 方法)
is_terminal() (Bio.Phylo.BaseTree.Tree 方法)
isatty() (Bio.bgzf.BgzfReader 方法)
isatty() (Bio.bgzf.BgzfWriter 方法)
isDomainInEv() (Bio.SCOP.Astral 方法)
isDomainInId() (Bio.SCOP.Astral 方法)
isoelectric_point() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
IsoelectricPoint(Bio.SeqUtils.IsoelectricPoint 中的类)
isprofile(Bio.Align.Applications.ClustalOmegaCommandline 属性)
itemindex()(在 Bio.MarkovModel 模块中)
items() (Bio.Align.substitution_matrices.Array 方法)
items() (Bio.Phylo.PhyloXML.Events 方法)
items() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
items() (BioSQL.BioSeqDatabase.DBServer 方法)
iterate() (Bio.SeqIO.AbiIO.AbiIterator 方法)
iterate() (Bio.SeqIO.FastaIO.FastaIterator 方法)
iterate() (Bio.SeqIO.FastaIO.FastaTwoLineIterator 方法)
iterate() (Bio.SeqIO.IgIO.IgIterator 方法)
iterate() (Bio.SeqIO.NibIO.NibIterator 方法)
iterate() (Bio.SeqIO.PdbIO.PdbSeqresIterator 方法)
iterate() (Bio.SeqIO.PirIO.PirIterator 方法)
iterate() (Bio.SeqIO.QualityIO.FastqPhredIterator 方法)
iterate() (Bio.SeqIO.QualityIO.QualPhredIterator 方法)
iterate() (Bio.SeqIO.SeqXmlIO.SeqXmlIterator 方法)
iterate() (Bio.SeqIO.SffIO.SffIterator 方法)
iterate() (Bio.SeqIO.SnapGeneIO.SnapGeneIterator 方法)
iterate() (Bio.SeqIO.TabIO.TabIterator 方法)
iterate() (Bio.SeqIO.XdnaIO.XdnaIterator 方法)
iterations(Bio.Align.Applications.ClustalOmegaCommandline 属性)
iteration(Bio.Align.Applications.ClustalwCommandline 属性)
iterative_refinement(Bio.Align.Applications.MSAProbsCommandline 属性)
Iterator(Bio.GenBank 中的类)
iw(Bio.Align.Applications.DialignCommandline 属性)
I(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
i(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
I(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
i(Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 属性)
I(Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 属性)
J
JASPAR5(Bio.motifs.jaspar.db 中的类)
join() (Bio.Seq.UnknownSeq 方法)
JsonIterator()(在 Bio.phenotype.phen_micro 模块中)
JsonWriter(Bio.phenotype.phen_micro 中的类)
jtt(Bio.Align.Applications.MafftCommandline 属性)
jumble(Bio.Emboss.Applications.FNeighborCommandline 属性)
jusweights(Bio.Emboss.Applications.FSeqBootCommandline 属性)
K
kappa(Bio.Align.Applications.PrankCommandline 属性)
kcluster() (Bio.Cluster.Record 方法)
kcluster()(在 Bio.Cluster 模块中)
kegg_conv()(在 Bio.KEGG.REST 模块中)
kegg_find()(在 Bio.KEGG.REST 模块中)
kegg_get()(在 Bio.KEGG.REST 模块中)
kegg_info()(在 Bio.KEGG.REST 模块中)
kegg_link()(在 Bio.KEGG.REST 模块中)
kegg_list()(在 Bio.KEGG.REST 模块中)
keys() (Bio.Align.substitution_matrices.Array 方法)
keys() (Bio.PDB.AbstractPropertyMap.AbstractPropertyMap 方法)
keys() (Bio.Phylo.PhyloXML.Events 方法)
keys() (Bio.SeqIO.TwoBitIO.TwoBitIterator 方法)
keys() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
keys() (BioSQL.BioSeqDatabase.DBServer 方法)
keys_to_process(Bio.GenBank.utils.FeatureValueCleaner 属性)
KGMLParser(Bio.KEGG.KGML.KGML_parser 中的类)
kill() (Bio.Nexus.Nodes.Chain 方法)
kimura(Bio.Align.Applications.ClustalwCommandline 属性)
kmedoids()(在 Bio.Cluster 模块中)
kNN(Bio.kNN 中的类)
KnownStateTrainer(Bio.HMM.Trainer 中的类)
ktuple(Bio.Align.Applications.ClustalwCommandline 属性)
k(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
k(Bio.Sequencing.Applications.BwaMemCommandline 属性)
k(Bio.Sequencing.Applications.SamtoolsPhaseCommandline 属性)
L
labels() (Bio.Pathway.Rep.Graph.Graph 方法)
labels() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
ladderize() (Bio.Phylo.BaseTree.TreeMixin 方法)
last_id() (BioSQL.BioSeqDatabase.Adaptor 方法)
last_id() (BioSQL.DBUtils.Generic_dbutils 方法)
last_id() (BioSQL.DBUtils.Mysql_dbutils 方法)
lat() (Bio.Phylo.PhyloXMLIO.Writer 方法)
lcase_masking(Bio.Blast.Applications.NcbiblastnCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbiblastpCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbiblastxCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbideltablastCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbitblastnCommandline 属性)
lcase_masking(Bio.Blast.Applications.NcbitblastxCommandline 属性)
lcc_mult()(在 Bio.SeqUtils.lcc 模块中)
lcc_simp()(在 Bio.SeqUtils.lcc 模块中)
left_multiply() (Bio.PDB.vectors.Vector 方法)
len12(Bio.PDB.internal_coords.Hedron 属性)
len23(Bio.PDB.internal_coords.Hedron 属性)
lep(Bio.Align.Applications.MafftCommandline 属性)
letter_annotations(Bio.SeqRecord.SeqRecord 属性)
LETTERS_PER_BLOCK(Bio.SeqIO.InsdcIO.EmblWriter 属性)
LETTERS_PER_LINE(Bio.SeqIO.InsdcIO.EmblWriter 属性)
LETTERS_PER_LINE(Bio.SeqIO.InsdcIO.GenBankWriter 属性)
LEXP(Bio.Align.Applications.MafftCommandline 属性)
lexp(Bio.Align.Applications.MafftCommandline 属性)
le(Bio.Align.Applications.MuscleCommandline 属性)
lgs_t(Bio.Align.Applications.DialignCommandline 属性)
lgs(Bio.Align.Applications.DialignCommandline 属性)
line_length(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
line_length(Bio.Blast.Applications.NcbiblastnCommandline 属性)
line_length(Bio.Blast.Applications.NcbiblastpCommandline 属性)
line_length(Bio.Blast.Applications.NcbiblastxCommandline 属性)
line_length(Bio.Blast.Applications.NcbideltablastCommandline 属性)
line_length(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
line_length(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
line_length(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
line_length(Bio.Blast.Applications.NcbitblastnCommandline 属性)
line_length(Bio.Blast.Applications.NcbitblastxCommandline 属性)
linesize(Bio.Restriction.PrintFormat.PrintFormat 属性)
link() (Bio.Nexus.Nodes.Chain 方法)
link_dihedra() (Bio.PDB.internal_coords.IC_Residue 方法)
link_residues() (Bio.PDB.internal_coords.IC_Chain 方法)
list_ambiguous_codons()(在 Bio.Data.CodonTable 模块中)
list_any_ids() (BioSQL.BioSeqDatabase.Adaptor 方法)
list_biodatabase_names() (BioSQL.BioSeqDatabase.Adaptor 方法)
list_bioentry_display_ids() (BioSQL.BioSeqDatabase.Adaptor 方法)
list_bioentry_ids() (BioSQL.BioSeqDatabase.Adaptor 方法)
list_possible_proteins()(在 Bio.Data.CodonTable 模块中)
ListElement(Bio.Entrez.Parser 中的类)
lmax(Bio.Align.Applications.DialignCommandline 属性)
load() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
load()(在 Bio.Align.substitution_matrices 模块中)
load()(在 Bio.MarkovModel 模块中)
load_database_sql() (BioSQL.BioSeqDatabase.DBServer 方法)
load_PIC() (Bio.PDB.internal_coords.IC_Residue 方法)
load_seqrecord() (BioSQL.Loader.DatabaseLoader 方法)
local_dtd_dir(Bio.Entrez.Parser.DataHandler 属性)
local_xsd_dir(Bio.Entrez.Parser.DataHandler 属性)
localpair(Bio.Align.Applications.MafftCommandline 属性)
location() (Bio.Phylo.PhyloXMLIO.Writer 方法)
location_operator(Bio.SeqFeature.SeqFeature 属性)
LocationParserError
log_likelihood() (Bio.HMM.Trainer.AbstractTrainer 方法)
log_odds() (Bio.motifs.matrix.PositionWeightMatrix 方法)
loga(Bio.Align.Applications.MuscleCommandline 属性)
LogDPAlgorithms(Bio.HMM.DynamicProgramming 中的类)
logfile(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
logistic()(在 Bio.phenotype.pm_fitting 模块中)
LogisticRegression(Bio.LogisticRegression 中的类)
log(Bio.Align.Applications.ClustalOmegaCommandline 属性)
log(Bio.Align.Applications.MuscleCommandline 属性)
log(Bio.Phylo.Applications.FastTreeCommandline 属性)
long() (Bio.Phylo.PhyloXMLIO.Writer 方法)
long_version(Bio.Align.Applications.ClustalOmegaCommandline 属性)
longseq(Bio.Align.Applications.PrankCommandline 属性)
lookup() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
loopgap(Bio.Align.Applications.ClustalwCommandline 属性)
LOP(Bio.Align.Applications.MafftCommandline 属性)
lop(Bio.Align.Applications.MafftCommandline 属性)
losses() (Bio.Phylo.PhyloXMLIO.Writer 方法)
lower() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
lower() (Bio.Seq.UnknownSeq 方法)
lower() (Bio.SeqRecord.SeqRecord 方法)
lower(Bio.Emboss.Applications.FDNADistCommandline 属性)
lo(Bio.Align.Applications.DialignCommandline 属性)
lstrip() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
lysinemodified(Bio.Emboss.Applications.IepCommandline 属性)
l(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
L(Bio.Sequencing.Applications.BwaMemCommandline 属性)
L(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
l(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
l(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
M
m2rotaxis()(在 Bio.PDB.vectors 模块中)
MafftCommandline(Bio.Align.Applications 中的类)
MafIndex(Bio.AlignIO.MafIO 中的类)
MafIterator()(在 Bio.AlignIO.MafIO 模块中)
MafWriter(Bio.AlignIO.MafIO 中的类)
main()(在 Bio.Wise 模块中)
main()(在 Bio.Wise.dnal 模块中)
main()(在 Bio.Wise.psw 模块中)
majority_consensus()(在 Bio.Phylo.Consensus 模块中)
make_back_table()(在 Bio.Data.CodonTable 模块中)
make_dssp_dict()(在 Bio.PDB.DSSP 模块中)
make_format() (Bio.Restriction.PrintFormat.PrintFormat 方法)
make_table()(在 Bio.SeqUtils.MeltingTemp 模块中)
make_virtual_offset()(在 Bio.bgzf 模块中)
makematrix(Bio.Phylo.Applications.FastTreeCommandline 属性)
map() (Bio.Align.PairwiseAlignment 方法)
maps(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
MarkovModelBuilder(Bio.HMM.MarkovModel 中的类)
MarkovModel(Bio.MarkovModel 中的类)
mask_data(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
mask_desc(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
mask_id(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
mask(Bio.Align.Applications.DialignCommandline 属性)
mask(Bio.motifs.Motif 属性)
mat_thr(Bio.Align.Applications.DialignCommandline 属性)
matches()(在 Bio.Phylo.NeXMLIO 模块中)
match(Bio.Emboss.Applications.EInvertedCommandline 属性)
match(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
mate_file(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
matinitsize(Bio.Align.Applications.PrankCommandline 属性)
matresize(Bio.Align.Applications.PrankCommandline 属性)
matrixtype(Bio.Emboss.Applications.FNeighborCommandline 属性)
matrix(Bio.Align.Applications.ClustalwCommandline 属性)
matrix(Bio.Align.Applications.MuscleCommandline 属性)
matrix(Bio.Align.Applications.TCoffeeCommandline 属性)
matrix(Bio.Blast.Applications.NcbiblastpCommandline 属性)
matrix(Bio.Blast.Applications.NcbiblastxCommandline 属性)
matrix(Bio.Blast.Applications.NcbideltablastCommandline 属性)
matrix(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
matrix(Bio.Blast.Applications.NcbitblastnCommandline 属性)
matrix(Bio.Blast.Applications.NcbitblastxCommandline 属性)
matrix(Bio.Phylo.Applications.FastTreeCommandline 属性)
mat(Bio.Align.Applications.DialignCommandline 属性)
MauveIterator(Bio.AlignIO.MauveIO 中的类)
MauveWriter(Bio.AlignIO.MauveIO 中的类)
max_file_sz(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
max_guidetree_iterations(Bio.Align.Applications.ClustalOmegaCommandline 属性)
max_hmm_iterations(Bio.Align.Applications.ClustalOmegaCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbiblastnCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbiblastpCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbiblastxCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbideltablastCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbitblastnCommandline 属性)
max_hsps_per_subject(Bio.Blast.Applications.NcbitblastxCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbiblastnCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbiblastpCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbiblastxCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbideltablastCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbitblastnCommandline 属性)
max_hsps(Bio.Blast.Applications.NcbitblastxCommandline 属性)
max_intron_length(Bio.Blast.Applications.NcbiblastxCommandline 属性)
max_intron_length(Bio.Blast.Applications.NcbitblastnCommandline 属性)
max_intron_length(Bio.Blast.Applications.NcbitblastxCommandline 属性)
max_link(Bio.Align.Applications.DialignCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbiblastnCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbiblastpCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbiblastxCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbideltablastCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbitblastnCommandline 属性)
max_target_seqs(Bio.Blast.Applications.NcbitblastxCommandline 属性)
maxbranches(Bio.Align.Applications.PrankCommandline 属性)
maxdiagbreak(Bio.Align.Applications.MuscleCommandline 属性)
maxdifftm(Bio.Emboss.Applications.Primer3Commandline 属性)
maxdiv(Bio.Align.Applications.ClustalwCommandline 属性)
MaxEntropy(Bio.MaxEntropy 中的类)
maxgc(Bio.Emboss.Applications.Primer3Commandline 属性)
maxhours(Bio.Align.Applications.MuscleCommandline 属性)
maximum() (Bio.Phylo.PhyloXMLIO.Writer 方法)
maxiterate(Bio.Align.Applications.MafftCommandline 属性)
maxiters(Bio.Align.Applications.MuscleCommandline 属性)
maxmispriming(Bio.Emboss.Applications.Primer3Commandline 属性)
maxnumseq(Bio.Align.Applications.ClustalOmegaCommandline 属性)
maxpallen(Bio.Emboss.Applications.PalindromeCommandline 属性)
MaxPeptideBond(Bio.PDB.internal_coords.IC_Chain 属性)
maxpolyx(Bio.Emboss.Applications.Primer3Commandline 属性)
maxrepeat(Bio.Emboss.Applications.EInvertedCommandline 属性)
maxrepeat(Bio.Emboss.Applications.ETandemCommandline 属性)
maxseqlen(Bio.Align.Applications.ClustalOmegaCommandline 属性)
maxseqlen(Bio.Align.Applications.ClustalwCommandline 属性)
maxsize(Bio.Emboss.Applications.Primer3Commandline 属性)
MaxSize(Bio.Restriction.PrintFormat.PrintFormat 属性)
maxtm(Bio.Emboss.Applications.Primer3Commandline 属性)
maxtrees(Bio.Align.Applications.MuscleCommandline 属性)
maxtrees(Bio.Emboss.Applications.FDNAParsCommandline 属性)
max(Bio.motifs.matrix.PositionSpecificScoringMatrix 属性)
ma(Bio.Align.Applications.DialignCommandline 属性)
mean() (Bio.motifs.matrix.PositionSpecificScoringMatrix 方法)
memsave(Bio.Align.Applications.MafftCommandline 属性)
merge_with_support() (Bio.Nexus.Trees.Tree 方法)
methods(Bio.Phylo.TreeConstruction.DistanceTreeConstructor 属性)
method(Bio.Emboss.Applications.FConsenseCommandline 属性)
method(Bio.Emboss.Applications.FDNADistCommandline 属性)
method(Bio.Emboss.Applications.FProtDistCommandline 属性)
min_dist()(在 Bio.PDB.ResidueDepth 模块中)
min_link(Bio.Align.Applications.DialignCommandline 属性)
min_raw_gapped_score(Bio.Blast.Applications.NcbiblastnCommandline 属性)
minbestcolscore(Bio.Align.Applications.MuscleCommandline 属性)
mingc(Bio.Emboss.Applications.Primer3Commandline 属性)
minimum() (Bio.Phylo.PhyloXMLIO.Writer 方法)
minpallen(Bio.Emboss.Applications.PalindromeCommandline 属性)
minrepeat(Bio.Emboss.Applications.ETandemCommandline 属性)
minscore(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
minscore(Bio.Emboss.Applications.NeedleallCommandline 属性)
minsize(Bio.Emboss.Applications.Primer3Commandline 属性)
minsmoothscore(Bio.Align.Applications.MuscleCommandline 属性)
mintm(Bio.Emboss.Applications.Primer3Commandline 属性)
min(Bio.motifs.matrix.PositionSpecificScoringMatrix 属性)
miRNA(Bio.Sequencing.Applications.NovoalignCommandline 属性)
mishyblibraryfile(Bio.Emboss.Applications.Primer3Commandline 属性)
mismatchpercent(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
mismatch(Bio.Emboss.Applications.EInvertedCommandline 属性)
mismatch(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
mismatch(Bio.Emboss.Applications.ETandemCommandline 属性)
mispriminglibraryfile(Bio.Emboss.Applications.Primer3Commandline 属性)
MissingAtomError
MissingExternalDependencyError
MissingPythonDependencyError
mktest()(在 Bio.codonalign.codonalignment 模块中)
ml_estimator() (Bio.HMM.Trainer.AbstractTrainer 方法)
mlacc(Bio.Phylo.Applications.FastTreeCommandline 属性)
mlfrac(Bio.Emboss.Applications.FConsenseCommandline 属性)
mllen(Bio.Phylo.Applications.FastTreeCommandline 属性)
mlnni(Bio.Phylo.Applications.FastTreeCommandline 属性)
MMCIF2Dict(Bio.PDB.MMCIF2Dict 中的类)
MMCIFIO(Bio.PDB.mmcifio 中的类)
MMCIFParser(Bio.PDB.MMCIFParser 中的类)
models(Bio.Phylo.TreeConstruction.DistanceCalculator 属性)
Model(Bio.PDB.Model 中的类)
model(Bio.Phylo.Applications.PhymlCommandline 属性)
model(Bio.Phylo.Applications.RaxmlCommandline 属性)
mode(Bio.Align.Applications.TCoffeeCommandline 属性)
mode(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
modify() (Bio.motifs.thresholds.ScoreDistribution 方法)
mol_seq() (Bio.Phylo.PhyloXMLIO.Parser 方法)
mol_seq() (Bio.Phylo.PhyloXMLIO.Writer 方法)
molar_extinction_coefficient() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
molecular_weight() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
molecular_weight()(在 Bio.SeqUtils 模块中)
MolSeq(Bio.Phylo.PhyloXML 中的类)
Motif(Bio.motifs 中的类)
Motif(Bio.motifs.jaspar 中的类)
Motif(Bio.motifs.meme 中的类)
Motif(Bio.motifs.transfac 中的类)
mot(Bio.Align.Applications.DialignCommandline 属性)
msa_master_idx(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
MSAProbsCommandline(Bio.Align.Applications 中的类)
MsfIterator(Bio.AlignIO.MsfIO 中的类)
msfout(Bio.Align.Applications.MuscleCommandline 属性)
msf(Bio.Align.Applications.DialignCommandline 属性)
msf(Bio.Align.Applications.MuscleCommandline 属性)
mttranslate(Bio.Align.Applications.PrankCommandline 属性)
multi_rot_Y()(在 Bio.PDB.vectors 模块中)
multi_rot_Z()(在 Bio.PDB.vectors 模块中)
MultiGraph(Bio.Pathway.Rep.MultiGraph 中的类)
multiple_value_keys(Bio.motifs.transfac.Motif 属性)
MultipleAlignment(Bio.Blast.Record 中的类)
MultipleSeqAlignment(Bio.Align 中的类)
multiple(Bio.Phylo.Applications.PhymlCommandline 属性)
MuscleCommandline(Bio.Align.Applications 中的类)
MutableSeq(Bio.Seq 中的类)
Mysql_dbutils(BioSQL.DBUtils 中的类)
MysqlConnectorAdaptor(BioSQL.BioSeqDatabase 中的类)
m(Bio.Align.Applications.PrankCommandline 属性)
M(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
M(Bio.Sequencing.Applications.BwaMemCommandline 属性)
M(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
m(Bio.Sequencing.Applications.SamtoolsVersion0xSortCommandline 属性)
m(Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 属性)
N
n_rand_starts(Bio.Phylo.Applications.PhymlCommandline 属性)
NACCESS_atomic(Bio.PDB.NACCESS 中的类)
NACCESS(Bio.PDB.NACCESS 中的类)
NaiveBayes(Bio.NaiveBayes 中的类)
name() (Bio.Phylo.PhyloXMLIO.Writer 方法)
namelength(Bio.Align.Applications.MafftCommandline 属性)
NameWidth(Bio.Restriction.PrintFormat.PrintFormat 属性)
name(Bio.KEGG.KGML.KGML_pathway.Entry 属性)
name(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
name(Bio.KEGG.KGML.KGML_pathway.Reaction 属性)
name(Bio.Phylo.Applications.RaxmlCommandline 属性)
ncategories(Bio.Emboss.Applications.FDNADistCommandline 属性)
ncategories(Bio.Emboss.Applications.FProtDistCommandline 属性)
NcbiblastformatterCommandline(Bio.Blast.Applications 中的类)
NcbiblastnCommandline(Bio.Blast.Applications 中的类)
NcbiblastpCommandline(Bio.Blast.Applications 中的类)
NcbiblastxCommandline(Bio.Blast.Applications 中的类)
NCBICodonTableDNA(Bio.Data.CodonTable 中的类)
NCBICodonTableRNA(Bio.Data.CodonTable 中的类)
NCBICodonTable(Bio.Data.CodonTable 中的类)
NcbideltablastCommandline(Bio.Blast.Applications 中的类)
NcbimakeblastdbCommandline(Bio.Blast.Applications 中的类)
NcbipsiblastCommandline(Bio.Blast.Applications 中的类)
NcbirpsblastCommandline(Bio.Blast.Applications 中的类)
NcbirpstblastnCommandline(Bio.Blast.Applications 中的类)
NcbitblastnCommandline(Bio.Blast.Applications 中的类)
NcbitblastxCommandline(Bio.Blast.Applications 中的类)
nclasses(Bio.Phylo.Applications.PhymlCommandline 属性)
NeedleallCommandline(Bio.Emboss.Applications 中的类)
NeedleCommandline(Bio.Emboss.Applications 中的类)
negative_gilist(Bio.Blast.Applications.NcbiblastnCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbiblastpCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbiblastxCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbideltablastCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbitblastnCommandline 属性)
negative_gilist(Bio.Blast.Applications.NcbitblastxCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbiblastnCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbiblastpCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbiblastxCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbideltablastCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbitblastnCommandline 属性)
negative_seqidlist(Bio.Blast.Applications.NcbitblastxCommandline 属性)
negative(Bio.Align.Applications.ClustalwCommandline 属性)
NeighborSearch(Bio.PDB.NeighborSearch 中的类)
Network(Bio.Pathway 中的类)
new_clade() (Bio.Phylo.NewickIO.Parser 方法)
new_database() (BioSQL.BioSeqDatabase.DBServer 方法)
new_label() (Bio.Phylo.NeXMLIO.Writer 方法)
NewickError
newtree1(Bio.Align.Applications.ClustalwCommandline 属性)
newtree2(Bio.Align.Applications.ClustalwCommandline 属性)
newtree(Bio.Align.Applications.ClustalwCommandline 属性)
NeXMLError
next_nonwhitespace() (Bio.Nexus.Nexus.CharBuffer 方法)
next_until() (Bio.Nexus.Nexus.CharBuffer 方法)
next_word() (Bio.Nexus.Nexus.CharBuffer 方法)
NexusError
,
[1]
NexusIterator()(在 Bio.AlignIO.NexusIO 模块中)
NexusWriter(Bio.AlignIO.NexusIO 中的类)
Nexus(Bio.Nexus.Nexus 中的类)
NibIterator(Bio.SeqIO.NibIO 中的类)
NibWriter(Bio.SeqIO.NibIO 中的类)
nj() (Bio.Phylo.TreeConstruction.DistanceTreeConstructor 方法)
njumble(Bio.Emboss.Applications.FDNAParsCommandline 属性)
njumble(Bio.Emboss.Applications.FProtParsCommandline 属性)
nj(Bio.Phylo.Applications.FastTreeCommandline 属性)
NNITreeSearcher(Bio.Phylo.TreeConstruction 中的类)
nni(Bio.Phylo.Applications.FastTreeCommandline 属性)
no2nd(Bio.Phylo.Applications.FastTreeCommandline 属性)
no_greedy(Bio.Blast.Applications.NcbiblastnCommandline 属性)
noanchors(Bio.Align.Applications.MuscleCommandline 属性)
nobrief(Bio.Emboss.Applications.NeedleallCommandline 属性)
nobrief(Bio.Emboss.Applications.NeedleCommandline 属性)
nobrief(Bio.Emboss.Applications.WaterCommandline 属性)
nocat(Bio.Phylo.Applications.FastTreeCommandline 属性)
nocore(Bio.Align.Applications.MuscleCommandline 属性)
node() (Bio.Nexus.Trees.Tree 方法)
node_id() (Bio.Phylo.PhyloXMLIO.Writer 方法)
NodeData(Bio.Nexus.Trees 中的类)
NodeException
nodes() (Bio.Pathway.Rep.Graph.Graph 方法)
nodes() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
Node(Bio.Cluster 中的类)
Node(Bio.Nexus.Nodes 中的类)
Node(Bio.SCOP 中的类)
nofft(Bio.Align.Applications.MafftCommandline 属性)
nofuzzy_end(Bio.SeqFeature.CompoundLocation 属性)
nofuzzy_end(Bio.SeqFeature.FeatureLocation 属性)
nofuzzy_start(Bio.SeqFeature.CompoundLocation 属性)
nofuzzy_start(Bio.SeqFeature.FeatureLocation 属性)
nohgap(Bio.Align.Applications.ClustalwCommandline 属性)
nomatrix(Bio.Phylo.Applications.FastTreeCommandline 属性)
nome(Bio.Phylo.Applications.FastTreeCommandline 属性)
noml(Bio.Phylo.Applications.FastTreeCommandline 属性)
NoneElement(Bio.Entrez.Parser 中的类)
nopgap(Bio.Align.Applications.ClustalwCommandline 属性)
nopost(Bio.Align.Applications.PrankCommandline 属性)
nopr(Bio.Phylo.Applications.FastTreeCommandline 属性)
norm() (Bio.PDB.vectors.Vector 方法)
normalize() (Bio.motifs.matrix.FrequencyPositionMatrix 方法)
normalize() (Bio.PDB.vectors.Vector 方法)
normalize_letters()(在 Bio.SCOP.Raf 模块中)
normalized() (Bio.PDB.vectors.Vector 方法)
normsq() (Bio.PDB.vectors.Vector 方法)
noroot(Bio.Emboss.Applications.FTreeDistCommandline 属性)
noscore(Bio.Align.Applications.MafftCommandline 属性)
nosecstr1(Bio.Align.Applications.ClustalwCommandline 属性)
nosecstr2(Bio.Align.Applications.ClustalwCommandline 属性)
nosupport(Bio.Phylo.Applications.FastTreeCommandline 属性)
notermini(Bio.Emboss.Applications.IepCommandline 属性)
notop(Bio.Phylo.Applications.FastTreeCommandline 属性)
notree(Bio.Align.Applications.PrankCommandline 属性)
NotXMLError
NovoalignCommandline(Bio.Sequencing.Applications 中的类)
noweights(Bio.Align.Applications.ClustalwCommandline 属性)
noxml(Bio.Align.Applications.PrankCommandline 属性)
nt_search()(在 Bio.SeqUtils 模块中)
nta(Bio.Align.Applications.DialignCommandline 属性)
nt(Bio.Align.Applications.DialignCommandline 属性)
nt(Bio.Phylo.Applications.FastTreeCommandline 属性)
nucleotide_alphabet(Bio.Data.CodonTable.NCBICodonTable 属性)
nucleotide_alphabet(Bio.Data.CodonTable.NCBICodonTableDNA 属性)
nucleotide_alphabet(Bio.Data.CodonTable.NCBICodonTableRNA 属性)
nuc(Bio.Align.Applications.MafftCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbiblastnCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbiblastpCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbiblastxCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbideltablastCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbitblastnCommandline 属性)
num_alignments(Bio.Blast.Applications.NcbitblastxCommandline 属性)
num_bootstrap_searches(Bio.Phylo.Applications.RaxmlCommandline 属性)
num_categories(Bio.Phylo.Applications.RaxmlCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbiblastnCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbiblastpCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbiblastxCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbideltablastCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbitblastnCommandline 属性)
num_descriptions(Bio.Blast.Applications.NcbitblastxCommandline 属性)
num_iterations(Bio.Blast.Applications.NcbideltablastCommandline 属性)
num_iterations(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
num_replicates(Bio.Phylo.Applications.RaxmlCommandline 属性)
num_threads(Bio.Blast.Applications.NcbiblastnCommandline 属性)
num_threads(Bio.Blast.Applications.NcbiblastpCommandline 属性)
num_threads(Bio.Blast.Applications.NcbiblastxCommandline 属性)
num_threads(Bio.Blast.Applications.NcbideltablastCommandline 属性)
num_threads(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
num_threads(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
num_threads(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
num_threads(Bio.Blast.Applications.NcbitblastnCommandline 属性)
num_threads(Bio.Blast.Applications.NcbitblastxCommandline 属性)
number(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
numiter(Bio.Align.Applications.ClustalwCommandline 属性)
nummismatches(Bio.Emboss.Applications.PalindromeCommandline 属性)
numreturn(Bio.Emboss.Applications.Primer3Commandline 属性)
numthreads(Bio.Align.Applications.MSAProbsCommandline 属性)
n(Bio.Align.Applications.DialignCommandline 属性)
n(Bio.Phylo.Applications.FastTreeCommandline 属性)
N(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
n(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
N(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
N(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
n(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
n(Bio.Sequencing.Applications.BwaSamseCommandline 属性)
n(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
n(Bio.Sequencing.Applications.SamtoolsVersion0xSortCommandline 属性)
n(Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 属性)
O
oanyself(Bio.Emboss.Applications.Primer3Commandline 属性)
objscore(Bio.Align.Applications.MuscleCommandline 属性)
occ(Bio.PDB.internal_coords.AtomKey.fieldsDef 属性)
odnaconc(Bio.Emboss.Applications.Primer3Commandline 属性)
oendself(Bio.Emboss.Applications.Primer3Commandline 属性)
oexcludedregion(Bio.Emboss.Applications.Primer3Commandline 属性)
off_diagonal_range(Bio.Blast.Applications.NcbiblastnCommandline 属性)
ogcmax(Bio.Emboss.Applications.Primer3Commandline 属性)
ogcmin(Bio.Emboss.Applications.Primer3Commandline 属性)
ogcopt(Bio.Emboss.Applications.Primer3Commandline 属性)
ogcpercent(Bio.Emboss.Applications.Primer3Commandline 属性)
ok_applies_to(Bio.Phylo.PhyloXML.Property 属性)
ok_datatype(Bio.Phylo.PhyloXML.Property 属性)
ok_rank(Bio.Phylo.PhyloXML.Taxonomy 属性)
ok_type(Bio.Phylo.PhyloXML.Events 属性)
ok_type(Bio.Phylo.PhyloXML.SequenceRelation 属性)
oligoinput(Bio.Emboss.Applications.Primer3Commandline 属性)
omaxsize(Bio.Emboss.Applications.Primer3Commandline 属性)
ominsize(Bio.Emboss.Applications.Primer3Commandline 属性)
omishybmax(Bio.Emboss.Applications.Primer3Commandline 属性)
once(Bio.Align.Applications.PrankCommandline 属性)
one_to_index()(在 Bio.PDB.Polypeptide 模块中)
one_to_three()(在 Bio.PDB.Polypeptide 模块中)
OneOfPosition(Bio.SeqFeature 中的类)
open()(在 Bio.bgzf 模块中)
open_database()(在 BioSQL.BioSeqDatabase 模块中)
open_dtd_file() (Bio.Entrez.Parser.DataHandler 方法)
open_xsd_file() (Bio.Entrez.Parser.DataHandler 方法)
opolyxmax(Bio.Emboss.Applications.Primer3Commandline 属性)
optimize(Bio.Phylo.Applications.PhymlCommandline 属性)
options(Bio.Align.Applications.ClustalwCommandline 属性)
options(Bio.Emboss.Applications.DiffseqCommandline 属性)
options(Bio.Emboss.Applications.EInvertedCommandline 属性)
options(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
options(Bio.Emboss.Applications.ETandemCommandline 属性)
options(Bio.Emboss.Applications.FConsenseCommandline 属性)
options(Bio.Emboss.Applications.FDNADistCommandline 属性)
options(Bio.Emboss.Applications.FDNAParsCommandline 属性)
options(Bio.Emboss.Applications.FNeighborCommandline 属性)
options(Bio.Emboss.Applications.FProtDistCommandline 属性)
options(Bio.Emboss.Applications.FProtParsCommandline 属性)
options(Bio.Emboss.Applications.FSeqBootCommandline 属性)
options(Bio.Emboss.Applications.FTreeDistCommandline 属性)
options(Bio.Emboss.Applications.FuzznucCommandline 属性)
options(Bio.Emboss.Applications.FuzzproCommandline 属性)
options(Bio.Emboss.Applications.IepCommandline 属性)
options(Bio.Emboss.Applications.NeedleallCommandline 属性)
options(Bio.Emboss.Applications.NeedleCommandline 属性)
options(Bio.Emboss.Applications.PalindromeCommandline 属性)
options(Bio.Emboss.Applications.Primer3Commandline 属性)
options(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
options(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
options(Bio.Emboss.Applications.SeqretCommandline 属性)
options(Bio.Emboss.Applications.StretcherCommandline 属性)
options(Bio.Emboss.Applications.TranalignCommandline 属性)
options(Bio.Emboss.Applications.WaterCommandline 属性)
opttm(Bio.Emboss.Applications.Primer3Commandline 属性)
op(Bio.Align.Applications.MafftCommandline 属性)
original_taxon_order(Bio.Nexus.Nexus.Nexus 属性)
orthologs(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
osaltconc(Bio.Emboss.Applications.Primer3Commandline 属性)
osformat(Bio.Emboss.Applications.SeqretCommandline 属性)
osizeopt(Bio.Emboss.Applications.Primer3Commandline 属性)
osize(Bio.Emboss.Applications.Primer3Commandline 属性)
other() (Bio.Phylo.PhyloXMLIO.Parser 方法)
other() (Bio.Phylo.PhyloXMLIO.Writer 方法)
OTHER_INTERNAL_FORMAT(Bio.GenBank.Record.Record 属性)
Other(Bio.Phylo.PhyloXML 中的类)
otmmax(Bio.Emboss.Applications.Primer3Commandline 属性)
otmmin(Bio.Emboss.Applications.Primer3Commandline 属性)
otmopt(Bio.Emboss.Applications.Primer3Commandline 属性)
otm(Bio.Emboss.Applications.Primer3Commandline 属性)
out_ascii_pssm(Bio.Blast.Applications.NcbideltablastCommandline 属性)
out_ascii_pssm(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
out_block()(在 Bio.Geo.Record 模块中)
out_prefix(Bio.Sequencing.Applications.SamtoolsVersion0xSortCommandline 属性)
out_pssm(Bio.Blast.Applications.NcbideltablastCommandline 属性)
out_pssm(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
outfile(Bio.Align.Applications.ClustalOmegaCommandline 属性)
outfile(Bio.Align.Applications.ClustalwCommandline 属性)
outfile(Bio.Align.Applications.MSAProbsCommandline 属性)
outfile(Bio.Align.Applications.TCoffeeCommandline 属性)
outfile(Bio.Emboss.Applications.DiffseqCommandline 属性)
outfile(Bio.Emboss.Applications.EInvertedCommandline 属性)
outfile(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
outfile(Bio.Emboss.Applications.ETandemCommandline 属性)
outfile(Bio.Emboss.Applications.FConsenseCommandline 属性)
outfile(Bio.Emboss.Applications.FDNADistCommandline 属性)
outfile(Bio.Emboss.Applications.FDNAParsCommandline 属性)
outfile(Bio.Emboss.Applications.FNeighborCommandline 属性)
outfile(Bio.Emboss.Applications.FProtDistCommandline 属性)
outfile(Bio.Emboss.Applications.FProtParsCommandline 属性)
outfile(Bio.Emboss.Applications.FSeqBootCommandline 属性)
outfile(Bio.Emboss.Applications.FTreeDistCommandline 属性)
outfile(Bio.Emboss.Applications.FuzznucCommandline 属性)
outfile(Bio.Emboss.Applications.FuzzproCommandline 属性)
outfile(Bio.Emboss.Applications.IepCommandline 属性)
outfile(Bio.Emboss.Applications.NeedleallCommandline 属性)
outfile(Bio.Emboss.Applications.NeedleCommandline 属性)
outfile(Bio.Emboss.Applications.PalindromeCommandline 属性)
outfile(Bio.Emboss.Applications.Primer3Commandline 属性)
outfile(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
outfile(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
outfile(Bio.Emboss.Applications.StretcherCommandline 属性)
outfile(Bio.Emboss.Applications.TranalignCommandline 属性)
outfile(Bio.Emboss.Applications.WaterCommandline 属性)
outfmt(Bio.Align.Applications.ClustalOmegaCommandline 属性)
outfmt(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
outfmt(Bio.Blast.Applications.NcbiblastnCommandline 属性)
outfmt(Bio.Blast.Applications.NcbiblastpCommandline 属性)
outfmt(Bio.Blast.Applications.NcbiblastxCommandline 属性)
outfmt(Bio.Blast.Applications.NcbideltablastCommandline 属性)
outfmt(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
outfmt(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
outfmt(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
outfmt(Bio.Blast.Applications.NcbitblastnCommandline 属性)
outfmt(Bio.Blast.Applications.NcbitblastxCommandline 属性)
outgrno(Bio.Emboss.Applications.FConsenseCommandline 属性)
outgrno(Bio.Emboss.Applications.FDNAParsCommandline 属性)
outgrno(Bio.Emboss.Applications.FNeighborCommandline 属性)
outgrno(Bio.Emboss.Applications.FProtParsCommandline 属性)
outgrno(Bio.Emboss.Applications.FTreeDistCommandline 属性)
outgroup(Bio.Phylo.Applications.RaxmlCommandline 属性)
outorder(Bio.Align.Applications.ClustalwCommandline 属性)
outorder(Bio.Align.Applications.TCoffeeCommandline 属性)
output_file(Bio.Sequencing.Applications.SamtoolsFixmateCommandline 属性)
output_file(Bio.Sequencing.Applications.SamtoolsRmdupCommandline 属性)
outputorder(Bio.Align.Applications.ClustalOmegaCommandline 属性)
OutputRecord(Bio.Emboss.PrimerSearch 中的类)
outputtree(Bio.Align.Applications.ClustalwCommandline 属性)
output(Bio.Align.Applications.ClustalwCommandline 属性)
output(Bio.Align.Applications.TCoffeeCommandline 属性)
output(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
outseq(Bio.Emboss.Applications.SeqretCommandline 属性)
outseq(Bio.Emboss.Applications.TranalignCommandline 属性)
outtreefile(Bio.Emboss.Applications.FConsenseCommandline 属性)
outtreefile(Bio.Emboss.Applications.FDNAParsCommandline 属性)
outtreefile(Bio.Emboss.Applications.FNeighborCommandline 属性)
outtreefile(Bio.Emboss.Applications.FProtParsCommandline 属性)
out(Bio.Align.Applications.MuscleCommandline 属性)
out(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
out(Bio.Blast.Applications.NcbiblastnCommandline 属性)
out(Bio.Blast.Applications.NcbiblastpCommandline 属性)
out(Bio.Blast.Applications.NcbiblastxCommandline 属性)
out(Bio.Blast.Applications.NcbideltablastCommandline 属性)
out(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
out(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
out(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
out(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
out(Bio.Blast.Applications.NcbitblastnCommandline 属性)
out(Bio.Blast.Applications.NcbitblastxCommandline 属性)
out(Bio.Phylo.Applications.FastTreeCommandline 属性)
overlap(Bio.Emboss.Applications.PalindromeCommandline 属性)
ow(Bio.Align.Applications.DialignCommandline 属性)
o(Bio.Align.Applications.DialignCommandline 属性)
o(Bio.Align.Applications.PrankCommandline 属性)
O(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
o(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
O(Bio.Sequencing.Applications.BwaMemCommandline 属性)
o(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
o(Bio.Sequencing.Applications.SamtoolsCatCommandline 属性)
o(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
o(Bio.Sequencing.Applications.SamtoolsVersion0xSortCommandline 属性)
O(Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 属性)
o(Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 属性)
o(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
P
PairedFastaQualIterator()(在 Bio.SeqIO.QualityIO 模块中)
pairgap(Bio.Align.Applications.ClustalwCommandline 属性)
pairing(Bio.Emboss.Applications.FTreeDistCommandline 属性)
pairs(Bio.Align.Applications.ProbconsCommandline 属性)
PairwiseAligner(Bio.Align 中的类)
PairwiseAlignments(Bio.Align 中的类)
PairwiseAlignment(Bio.Align 中的类)
PalindromeCommandline(Bio.Emboss.Applications 中的类)
parameters(Bio.Application.AbstractCommandline 属性)
Parameters(Bio.Blast.Record 中的类)
paramfile(Bio.Align.Applications.ProbconsCommandline 属性)
parent_edges() (Bio.Pathway.Rep.Graph.Graph 方法)
parent_edges() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
parents() (Bio.Pathway.Rep.Graph.Graph 方法)
parents() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
parse() (Bio.Entrez.Parser.DataHandler 方法)
parse() (Bio.GenBank.FeatureParser 方法)
parse() (Bio.GenBank.RecordParser 方法)
parse() (Bio.GenBank.Scanner.InsdcScanner 方法)
parse() (Bio.KEGG.KGML.KGML_parser.KGMLParser 方法)
parse() (Bio.Phylo.NewickIO.Parser 方法)
parse() (Bio.Phylo.NeXMLIO.Parser 方法)
parse() (Bio.Phylo.PhyloXMLIO.Parser 方法)
parse() (Bio.SeqIO.AbiIO.AbiIterator 方法)
parse() (Bio.SeqIO.FastaIO.FastaIterator 方法)
parse() (Bio.SeqIO.FastaIO.FastaTwoLineIterator 方法)
parse() (Bio.SeqIO.GckIO.GckIterator 方法)
parse() (Bio.SeqIO.IgIO.IgIterator 方法)
parse() (Bio.SeqIO.InsdcIO.EmblCdsFeatureIterator 方法)
parse() (Bio.SeqIO.InsdcIO.EmblIterator 方法)
parse() (Bio.SeqIO.InsdcIO.GenBankCdsFeatureIterator 方法)
parse() (Bio.SeqIO.InsdcIO.GenBankIterator 方法)
parse() (Bio.SeqIO.InsdcIO.ImgtIterator 方法)
parse() (Bio.SeqIO.Interfaces.SequenceIterator 方法)
parse() (Bio.SeqIO.NibIO.NibIterator 方法)
parse() (Bio.SeqIO.PdbIO.PdbSeqresIterator 方法)
parse() (Bio.SeqIO.PirIO.PirIterator 方法)
parse() (Bio.SeqIO.QualityIO.FastqPhredIterator 方法)
parse() (Bio.SeqIO.QualityIO.QualPhredIterator 方法)
parse() (Bio.SeqIO.SeqXmlIO.SeqXmlIterator 方法)
parse() (Bio.SeqIO.SffIO.SffIterator 方法)
parse() (Bio.SeqIO.SnapGeneIO.SnapGeneIterator 方法)
parse() (Bio.SeqIO.TabIO.TabIterator 方法)
parse() (Bio.SeqIO.TwoBitIO.TwoBitIterator 方法)
parse() (Bio.SeqIO.UniprotIO.Parser 方法)
parse() (Bio.SeqIO.XdnaIO.XdnaIterator 方法)
parse()(在 Bio.AlignIO 模块中)
parse()(在 Bio.Blast.NCBIXML 模块中)
parse()(在 Bio.Compass 模块中)
parse()(在 Bio.Emboss.Primer3 模块中)
parse()(在 Bio.Entrez 模块中)
parse()(在 Bio.ExPASy.cellosaurus 模块中)
parse()(在 Bio.ExPASy.Enzyme 模块中)
parse()(在 Bio.ExPASy.Prodoc 模块中)
parse()(在 Bio.ExPASy.Prosite 模块中)
parse()(在 Bio.GenBank 模块中)
parse()(在 Bio.Geo 模块中)
parse()(在 Bio.KEGG.Compound 模块中)
parse()(在 Bio.KEGG.Enzyme 模块中)
parse()(在 Bio.KEGG.Gene 模块中)
parse()(在 Bio.KEGG.KGML.KGML_parser 模块中)
parse()(在 Bio.KEGG.Map 模块中)
parse()(在 Bio.Medline 模块中)
parse()(在 Bio.motifs 模块中)
parse()(在 Bio.phenotype 模块中)
parse()(在 Bio.Phylo.NewickIO 模块中)
parse()(在 Bio.Phylo.NeXMLIO 模块中)
parse()(在 Bio.Phylo.NexusIO 模块中)
parse()(在 Bio.Phylo.PhyloXMLIO 模块中)
parse()(在 Bio.SCOP.Cla 模块中)
parse()(在 Bio.SCOP.Des 模块中)
parse()(在 Bio.SCOP.Dom 模块中)
parse()(在 Bio.SCOP.Hie 模块中)
parse()(在 Bio.SCOP.Raf 模块中)
parse()(在 Bio.SearchIO 模块中)
parse()(在 Bio.SeqIO 模块中)
parse()(在 Bio.Sequencing.Ace 模块中)
parse()(在 Bio.Sequencing.Phd 模块中)
parse()(在 Bio.SwissProt 模块中)
parse()(在 Bio.SwissProt.KeyWList 模块中)
parse()(在 Bio.UniGene 模块中)
parse()(在 Bio.Wise.psw 模块中)
parse_alignment_block() (Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarParser 方法)
parse_alignment_block() (Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextParser 方法)
parse_alignment_block() (Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarParser 方法)
parse_cds_features() (Bio.GenBank.Scanner.InsdcScanner 方法)
parse_deflines(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbiblastnCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbiblastpCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbiblastxCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbideltablastCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbitblastnCommandline 属性)
parse_deflines(Bio.Blast.Applications.NcbitblastxCommandline 属性)
parse_domain()(在 Bio.SCOP 模块中)
parse_feature() (Bio.GenBank.Scanner.InsdcScanner 方法)
parse_features() (Bio.GenBank.Scanner.InsdcScanner 方法)
parse_footer() (Bio.GenBank.Scanner.EmblScanner 方法)
parse_footer() (Bio.GenBank.Scanner.GenBankScanner 方法)
parse_footer() (Bio.GenBank.Scanner.InsdcScanner 方法)
parse_header() (Bio.GenBank.Scanner.InsdcScanner 方法)
parse_hits() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
parse_hsp_alignments() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
parse_hsps() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
parse_key_value() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
parse_line()(在 Bio.Wise.psw 模块中)
parse_pdb_header()(在 Bio.PDB.parse_pdb_header 模块中)
parse_preamble() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
parse_qresult() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
parse_records() (Bio.GenBank.Scanner.InsdcScanner 方法)
parse_seqids(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
parse_xsd() (Bio.Entrez.Parser.DataHandler 方法)
ParserError
ParserFailureError
Parser(Bio.ExPASy.ScanProsite 中的类)
Parser(Bio.Phylo.NewickIO 中的类)
Parser(Bio.Phylo.NeXMLIO 中的类)
Parser(Bio.Phylo.PhyloXMLIO 中的类)
Parser(Bio.SeqIO.UniprotIO 中的类)
parsimony_seed(Bio.Phylo.Applications.RaxmlCommandline 属性)
ParsimonyScorer(Bio.Phylo.TreeConstruction 中的类)
ParsimonyTreeConstructor(Bio.Phylo.TreeConstruction 中的类)
parsimony(Bio.Phylo.Applications.RaxmlCommandline 属性)
pars(Bio.Phylo.Applications.PhymlCommandline 属性)
partition_branch_lengths(Bio.Phylo.Applications.RaxmlCommandline 属性)
partition_filename(Bio.Phylo.Applications.RaxmlCommandline 属性)
partsize(Bio.Align.Applications.MafftCommandline 属性)
parts(Bio.SeqFeature.FeatureLocation 属性)
parttree(Bio.Align.Applications.MafftCommandline 属性)
Pathway(Bio.KEGG.KGML.KGML_pathway 中的类)
pattern(Bio.Emboss.Applications.FuzznucCommandline 属性)
pattern(Bio.Emboss.Applications.FuzzproCommandline 属性)
pca()(在 Bio.Cluster 模块中)
pcb_vectors_pymol() (Bio.PDB.HSExposure.HSExposureCA 方法)
pdb_date()(在 Bio.PDB.PICIO 模块中)
PDB_REF(Bio.PDB.PDBList.PDBList 属性)
PdbAtomIterator()(在 Bio.SeqIO.PdbIO 模块中)
PDBConstructionException
PDBConstructionWarning
PDBException
PDBIO(Bio.PDB.PDBIO 中的类)
PDBList(Bio.PDB.PDBList 中的类)
PDBParser(Bio.PDB.PDBParser 中的类)
PdbSeqresIterator(Bio.SeqIO.PdbIO 中的类)
Peaklist(Bio.NMR.xpktools 中的类)
peek() (Bio.Nexus.Nexus.CharBuffer 方法)
peek_nonwhitespace() (Bio.Nexus.Nexus.CharBuffer 方法)
peek_word() (Bio.Nexus.Nexus.CharBuffer 方法)
penalty(Bio.Blast.Applications.NcbiblastnCommandline 属性)
perc_identity(Bio.Blast.Applications.NcbiblastnCommandline 属性)
percentid(Bio.Align.Applications.ClustalOmegaCommandline 属性)
pfam_gc_mapping(Bio.AlignIO.StockholmIO.StockholmIterator 属性)
pfam_gc_mapping(Bio.AlignIO.StockholmIO.StockholmWriter 属性)
pfam_gr_mapping(Bio.AlignIO.StockholmIO.StockholmIterator 属性)
pfam_gr_mapping(Bio.AlignIO.StockholmIO.StockholmWriter 属性)
pfam_gs_mapping(Bio.AlignIO.StockholmIO.StockholmIterator 属性)
pfam_gs_mapping(Bio.AlignIO.StockholmIO.StockholmWriter 属性)
Pgdb_dbutils(BioSQL.DBUtils 中的类)
PhdIterator()(在 Bio.SeqIO.PhdIO 模块中)
PhdWriter(Bio.SeqIO.PhdIO 中的类)
phi_pattern(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
phred_quality_from_solexa()(在 Bio.SeqIO.QualityIO 模块中)
phyiout(Bio.Align.Applications.MuscleCommandline 属性)
phyi(Bio.Align.Applications.MuscleCommandline 属性)
PhylipIterator(Bio.AlignIO.PhylipIO 中的类)
phylipout(Bio.Align.Applications.MafftCommandline 属性)
PhylipWriter(Bio.AlignIO.PhylipIO 中的类)
PhyloElement(Bio.Phylo.PhyloXML 中的类)
phylogeny() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Phylogeny(Bio.Phylo.PhyloXML 中的类)
phyloxml() (Bio.Phylo.PhyloXMLIO.Writer 方法)
PhyloXMLError
PhyloXMLWarning
Phyloxml(Bio.Phylo.PhyloXML 中的类)
PhymlCommandline(Bio.Phylo.Applications 中的类)
physout(Bio.Align.Applications.MuscleCommandline 属性)
phys(Bio.Align.Applications.MuscleCommandline 属性)
pi() (Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint 方法)
pick_angle() (Bio.PDB.internal_coords.IC_Residue 方法)
pick_length() (Bio.PDB.internal_coords.IC_Residue 方法)
pim(Bio.Align.Applications.ClustalwCommandline 属性)
PirIterator(Bio.SeqIO.PirIO 中的类)
PirWriter(Bio.SeqIO.PirIO 中的类)
PlateRecord(Bio.phenotype.phen_micro 中的类)
pmismatch(Bio.Emboss.Applications.FuzznucCommandline 属性)
pmismatch(Bio.Emboss.Applications.FuzzproCommandline 属性)
point() (Bio.Phylo.PhyloXMLIO.Parser 方法)
point() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Point(Bio.Phylo.PhyloXML 中的类)
polygon() (Bio.Phylo.PhyloXMLIO.Parser 方法)
polygon() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Polygon(Bio.Phylo.PhyloXML 中的类)
Polypeptide(Bio.PDB.Polypeptide 中的类)
pop() (Bio.Seq.MutableSeq 方法)
pos_specific_score_matrix() (Bio.Align.AlignInfo.SummaryInfo 方法)
POSITION_PADDING(Bio.SeqIO.InsdcIO.EmblWriter 属性)
PositionGap(Bio.SeqFeature 中的类)
PositionSpecificScoringMatrix(Bio.motifs.matrix 中的类)
PositionWeightMatrix(Bio.motifs.matrix 中的类)
position(Bio.SeqFeature.AfterPosition 属性)
position(Bio.SeqFeature.BeforePosition 属性)
position(Bio.SeqFeature.BetweenPosition 属性)
position(Bio.SeqFeature.ExactPosition 属性)
position(Bio.SeqFeature.OneOfPosition 属性)
position(Bio.SeqFeature.UnknownPosition 属性)
position(Bio.SeqFeature.WithinPosition 属性)
PPBuilder(Bio.PDB.Polypeptide 中的类)
prange(Bio.Emboss.Applications.Primer3Commandline 属性)
PrankCommandline(Bio.Align.Applications 中的类)
predictNOE()(在 Bio.NMR.NOEtools 模块中)
prefix(Bio.Sequencing.Applications.BwaIndexCommandline 属性)
PrefWidth(Bio.Restriction.PrintFormat.PrintFormat 属性)
pretty_print_prediction()(在 Bio.HMM.Utilities 模块中)
pretty_str() (Bio.PDB.internal_coords.IC_Residue 方法)
pre(Bio.Align.Applications.ProbconsCommandline 属性)
Primer3Commandline(Bio.Emboss.Applications 中的类)
PrimerSearchCommandline(Bio.Emboss.Applications 中的类)
Primers(Bio.Emboss.Primer3 中的类)
print_as() (Bio.Restriction.PrintFormat.PrintFormat 方法)
print_index() (Bio.SeqUtils.CodonUsage.CodonAdaptationIndex 方法)
print_info_content()(在 Bio.Align.AlignInfo 模块中)
print_matrix()(在 Bio.pairwise2 模块中)
print_options() (Bio.Phylo.PAML.codeml.Codeml 方法)
print_site_lnl(Bio.Phylo.Applications.PhymlCommandline 属性)
print_that() (Bio.Restriction.PrintFormat.PrintFormat 方法)
print_trace(Bio.Phylo.Applications.PhymlCommandline 属性)
PrintFormat(Bio.Restriction.PrintFormat 中的类)
printnodes(Bio.Align.Applications.PrankCommandline 属性)
ProbconsCommandline(Bio.Align.Applications 中的类)
process_asa_data()(在 Bio.PDB.NACCESS 模块中)
process_clade() (Bio.Phylo.NewickIO.Parser 方法)
process_rsa_data()(在 Bio.PDB.NACCESS 模块中)
products(Bio.KEGG.KGML.KGML_pathway.Reaction 属性)
profile1(Bio.Align.Applications.ClustalOmegaCommandline 属性)
profile1(Bio.Align.Applications.ClustalwCommandline 属性)
profile2(Bio.Align.Applications.ClustalOmegaCommandline 属性)
profile2(Bio.Align.Applications.ClustalwCommandline 属性)
profile(Bio.Align.Applications.ClustalwCommandline 属性)
profile(Bio.Align.Applications.MuscleCommandline 属性)
progress(Bio.Emboss.Applications.FNeighborCommandline 属性)
prop_invar(Bio.Phylo.Applications.PhymlCommandline 属性)
property() (Bio.Phylo.PhyloXMLIO.Parser 方法)
property() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Property(Bio.Phylo.PhyloXML 中的类)
protein_alphabet(Bio.Data.CodonTable.NCBICodonTable 属性)
protein_models(Bio.Phylo.TreeConstruction.DistanceCalculator 属性)
protein_model(Bio.Phylo.Applications.RaxmlCommandline 属性)
protein_scale() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
ProteinAnalysis(Bio.SeqUtils.ProtParam 中的类)
ProteinDomain(Bio.Phylo.PhyloXML 中的类)
ProtsimLine(Bio.UniGene 中的类)
prune() (Bio.Nexus.Trees.Tree 方法)
prune() (Bio.Phylo.BaseTree.TreeMixin 方法)
psea()(在 Bio.PDB.PSEA 模块中)
psea2HEC()(在 Bio.PDB.PSEA 模块中)
PSEA(Bio.PDB.PSEA 中的类)
pseudocounts(Bio.motifs.Motif 属性)
pseudocount(Bio.Blast.Applications.NcbideltablastCommandline 属性)
pseudocount(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
pseudo(Bio.Phylo.Applications.FastTreeCommandline 属性)
PSIBlast(Bio.Blast.Record 中的类)
psizeopt(Bio.Emboss.Applications.Primer3Commandline 属性)
PSSM(Bio.Align.AlignInfo 中的类)
pssm(Bio.motifs.Motif 属性)
pst(Bio.Align.Applications.DialignCommandline 属性)
Psycopg2_dbutils(BioSQL.DBUtils 中的类)
ptmmax(Bio.Emboss.Applications.Primer3Commandline 属性)
ptmmin(Bio.Emboss.Applications.Primer3Commandline 属性)
ptmopt(Bio.Emboss.Applications.Primer3Commandline 属性)
push_back() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
pwdist(Bio.Align.Applications.PrankCommandline 属性)
pwdnamatrix(Bio.Align.Applications.ClustalwCommandline 属性)
pwgapext(Bio.Align.Applications.ClustalwCommandline 属性)
pwgapopen(Bio.Align.Applications.ClustalwCommandline 属性)
pwgenomicdist(Bio.Align.Applications.PrankCommandline 属性)
pwgenomic(Bio.Align.Applications.PrankCommandline 属性)
pwmatrix(Bio.Align.Applications.ClustalwCommandline 属性)
pwm(Bio.motifs.Motif 属性)
P(Bio.Sequencing.Applications.BwaMemCommandline 属性)
p(Bio.Sequencing.Applications.BwaMemCommandline 属性)
p(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
Q
qa(Bio.Sequencing.Ace 中的类)
qblast()(在 Bio.Blast.NCBIWWW 模块中)
qcov_hsp_perc(Bio.Blast.Applications.NcbiblastnCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbiblastpCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbiblastxCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbideltablastCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbitblastnCommandline 属性)
qcov_hsp_perc(Bio.Blast.Applications.NcbitblastxCommandline 属性)
QCPSuperimposer(Bio.PDB.QCPSuperimposer 中的类)
qend_mark(Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer 属性)
qresult_end(Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextIndexer 属性)
qresult_end(Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextIndexer 属性)
qresult_start(Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextIndexer 属性)
qresult_start(Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextIndexer 属性)
qstart_mark(Bio.SearchIO.BlastIO.blast_xml.BlastXmlIndexer 属性)
qual_digits(Bio.Sequencing.Applications.NovoalignCommandline 属性)
QUALIFIER_INDENT_STR(Bio.SeqIO.InsdcIO.EmblWriter 属性)
QUALIFIER_INDENT_STR(Bio.SeqIO.InsdcIO.ImgtWriter 属性)
QUALIFIER_INDENT_TMP(Bio.SeqIO.InsdcIO.EmblWriter 属性)
QUALIFIER_INDENT_TMP(Bio.SeqIO.InsdcIO.ImgtWriter 属性)
QUALIFIER_INDENT(Bio.SeqIO.InsdcIO.EmblWriter 属性)
QUALIFIER_INDENT(Bio.SeqIO.InsdcIO.GenBankWriter 属性)
QUALIFIER_INDENT(Bio.SeqIO.InsdcIO.ImgtWriter 属性)
Qualifier(Bio.GenBank.Record 中的类)
quality(Bio.Sequencing.Applications.NovoalignCommandline 属性)
QualPhredIterator(Bio.SeqIO.QualityIO 中的类)
QualPhredWriter(Bio.SeqIO.QualityIO 中的类)
query_coverage() (Bio.Compass.Record 方法)
query_gencode(Bio.Blast.Applications.NcbiblastxCommandline 属性)
query_gencode(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
query_gencode(Bio.Blast.Applications.NcbitblastxCommandline 属性)
query_loc(Bio.Blast.Applications.NcbiblastnCommandline 属性)
query_loc(Bio.Blast.Applications.NcbiblastpCommandline 属性)
query_loc(Bio.Blast.Applications.NcbiblastxCommandline 属性)
query_loc(Bio.Blast.Applications.NcbideltablastCommandline 属性)
query_loc(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
query_loc(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
query_loc(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
query_loc(Bio.Blast.Applications.NcbitblastnCommandline 属性)
query_loc(Bio.Blast.Applications.NcbitblastxCommandline 属性)
query(Bio.Blast.Applications.NcbiblastnCommandline 属性)
query(Bio.Blast.Applications.NcbiblastpCommandline 属性)
query(Bio.Blast.Applications.NcbiblastxCommandline 属性)
query(Bio.Blast.Applications.NcbideltablastCommandline 属性)
query(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
query(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
query(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
query(Bio.Blast.Applications.NcbitblastnCommandline 属性)
query(Bio.Blast.Applications.NcbitblastxCommandline 属性)
quicktree(Bio.Align.Applications.ClustalwCommandline 属性)
quiet(Bio.Align.Applications.ClustalwCommandline 属性)
quiet(Bio.Align.Applications.MafftCommandline 属性)
quiet(Bio.Align.Applications.MuscleCommandline 属性)
quiet(Bio.Align.Applications.PrankCommandline 属性)
quiet(Bio.Align.Applications.TCoffeeCommandline 属性)
quiet(Bio.Phylo.Applications.FastTreeCommandline 属性)
quiet(Bio.Phylo.Applications.PhymlCommandline 属性)
quotestrip()(在 Bio.Nexus.Nexus 模块中)
quote(Bio.Phylo.Applications.FastTreeCommandline 属性)
qUri()(在 Bio.Phylo.NeXMLIO 模块中)
q(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
q(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
Q(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
q(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
Q(Bio.Sequencing.Applications.SamtoolsPhaseCommandline 属性)
q(Bio.Sequencing.Applications.SamtoolsPhaseCommandline 属性)
Q(Bio.Sequencing.Applications.SamtoolsTargetcutCommandline 属性)
q(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
R
r_method(Bio.Sequencing.Applications.NovoalignCommandline 属性)
r_seed(Bio.Phylo.Applications.PhymlCommandline 属性)
rak() (Bio.PDB.internal_coords.IC_Residue 方法)
rand_start(Bio.Phylo.Applications.PhymlCommandline 属性)
random_starting_tree(Bio.Phylo.Applications.RaxmlCommandline 属性)
randomize() (Bio.Nexus.Trees.Tree 方法)
randomized()(Bio.Phylo.BaseTree.Tree 类方法)
range(Bio.Align.Applications.ClustalwCommandline 属性)
rank() (Bio.Phylo.PhyloXMLIO.Writer 方法)
rapid_bootstrap_seed(Bio.Phylo.Applications.RaxmlCommandline 属性)
rate(Bio.Emboss.Applications.FDNADistCommandline 属性)
rate(Bio.Emboss.Applications.FProtDistCommandline 属性)
raw() (Bio.Nexus.StandardData.StandardData 方法)
rawdist(Bio.Phylo.Applications.FastTreeCommandline 属性)
RaxmlCommandline(Bio.Phylo.Applications 中的类)
rd(Bio.Sequencing.Ace 中的类)
re_code(Bio.Phylo.PhyloXML.Taxonomy 属性)
re_doi(Bio.Phylo.PhyloXML.Reference 属性)
re_ref(Bio.Phylo.PhyloXML.Annotation 属性)
re_ref(Bio.Phylo.PhyloXML.Property 属性)
re_symbol(Bio.Phylo.PhyloXML.Sequence 属性)
re_value(Bio.Phylo.PhyloXML.MolSeq 属性)
reactant_ids(Bio.KEGG.KGML.KGML_pathway.Reaction 属性)
reaction_entries(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
reactions() (Bio.Pathway.System 方法)
reactions(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
Reaction(Bio.KEGG.KGML.KGML_pathway 中的类)
reaction(Bio.KEGG.KGML.KGML_pathway.Entry 属性)
Reaction(Bio.Pathway 中的类)
read() (Bio.bgzf.BgzfReader 方法)
read() (Bio.Entrez.Parser.DataHandler 方法)
read() (Bio.Nexus.Nexus.Nexus 方法)
read() (Bio.Phylo.PhyloXMLIO.Parser 方法)
read()(在 Bio.Affy.CelFile 模块中)
read()(在 Bio.Align.substitution_matrices 模块中)
read()(在 Bio.AlignIO 模块中)
read()(在 Bio.Blast.NCBIXML 模块中)
read()(在 Bio.Cluster 模块中)
read()(在 Bio.Compass 模块中)
read()(在 Bio.Emboss.Primer3 模块中)
read()(在 Bio.Emboss.PrimerSearch 模块中)
read()(在 Bio.Entrez 模块中)
read()(在 Bio.ExPASy.cellosaurus 模块中)
read()(在 Bio.ExPASy.Enzyme 模块中)
read()(在 Bio.ExPASy.Prodoc 模块中)
read()(在 Bio.ExPASy.Prosite 模块中)
read()(在 Bio.ExPASy.ScanProsite 模块中)
read()(在 Bio.GenBank 模块中)
read()(在 Bio.KEGG.Enzyme 模块中)
read()(在 Bio.KEGG.KGML.KGML_parser 模块中)
read()(在 Bio.Medline 模块中)
read()(在 Bio.motifs 模块中)
read()(在 Bio.motifs.alignace 模块中)
read()(在 Bio.motifs.clusterbuster 模块中)
read()(在 Bio.motifs.jaspar 模块中)
read()(在 Bio.motifs.mast 模块中)
read()(在 Bio.motifs.meme 模块中)
read()(在 Bio.motifs.minimal 模块中)
read()(在 Bio.motifs.pfm 模块中)
read()(在 Bio.motifs.transfac 模块中)
read()(在 Bio.motifs.xms 模块中)
read()(在 Bio.phenotype 模块中)
read()(在 Bio.Phylo.PAML.baseml 模块中)
read()(在 Bio.Phylo.PAML.codeml 模块中)
read()(在 Bio.Phylo.PAML.yn00 模块中)
read()(在 Bio.Phylo.PhyloXMLIO 模块中)
read()(在 Bio.PopGen.GenePop 模块中)
read()(在 Bio.PopGen.GenePop.FileParser 模块中)
read()(在 Bio.PopGen.GenePop.LargeFileParser 模块中)
read()(在 Bio.SearchIO 模块中)
read()(在 Bio.SeqIO 模块中)
read()(在 Bio.Sequencing.Ace 模块中)
read()(在 Bio.Sequencing.Phd 模块中)
read()(在 Bio.SwissProt 模块中)
read()(在 Bio.UniGene 模块中)
read_cal(Bio.Sequencing.Applications.NovoalignCommandline 属性)
read_ctl_file() (Bio.Phylo.PAML.baseml.Baseml 方法)
read_ctl_file() (Bio.Phylo.PAML.codeml.Codeml 方法)
read_ctl_file() (Bio.Phylo.PAML.yn00.Yn00 方法)
read_file1(Bio.Sequencing.Applications.BwaMemCommandline 属性)
read_file1(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
read_file2(Bio.Sequencing.Applications.BwaMemCommandline 属性)
read_file2(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
read_file(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
read_file(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
read_file(Bio.Sequencing.Applications.BwaSamseCommandline 属性)
read_next() (Bio.SearchIO.HmmerIO.hmmer2_text.Hmmer2TextParser 方法)
read_PIC()(在 Bio.PDB.PICIO 模块中)
reader_keywords(Bio.Blast.ParseBlastTable.BlastTableReader 属性)
readfile(Bio.Sequencing.Applications.NovoalignCommandline 属性)
readline() (Bio.bgzf.BgzfReader 方法)
ReadRocheXmlManifest()(在 Bio.SeqIO.SffIO 模块中)
Reads(Bio.Sequencing.Ace 中的类)
realbranches(Bio.Align.Applications.PrankCommandline 属性)
rearrangements(Bio.Phylo.Applications.RaxmlCommandline 属性)
rearrange(Bio.Emboss.Applications.FDNAParsCommandline 属性)
record_has()(在 Bio.UniProt.GOA 模块中)
RECORD_START(Bio.GenBank.Scanner.EmblScanner 属性)
RECORD_START(Bio.GenBank.Scanner.GenBankScanner 属性)
RECORD_START(Bio.GenBank.Scanner.InsdcScanner 属性)
recorded(Bio.Sequencing.Applications.NovoalignCommandline 属性)
RecordParser(Bio.GenBank 中的类)
Record(Bio.Affy.CelFile 中的类)
Record(Bio.Cluster 中的类)
Record(Bio.Compass 中的类)
Record(Bio.Emboss.Primer3 中的类)
Record(Bio.ExPASy.cellosaurus 中的类)
Record(Bio.ExPASy.Enzyme 中的类)
Record(Bio.ExPASy.Prodoc 中的类)
Record(Bio.ExPASy.Prosite 中的类)
Record(Bio.ExPASy.ScanProsite 中的类)
Record(Bio.GenBank.Record 中的类)
Record(Bio.Geo.Record 中的类)
Record(Bio.KEGG.Compound 中的类)
Record(Bio.KEGG.Enzyme 中的类)
Record(Bio.KEGG.Gene 中的类)
Record(Bio.Medline 中的类)
Record(Bio.motifs.alignace 中的类)
Record(Bio.motifs.clusterbuster 中的类)
Record(Bio.motifs.jaspar 中的类)
Record(Bio.motifs.mast 中的类)
Record(Bio.motifs.meme 中的类)
Record(Bio.motifs.minimal 中的类)
Record(Bio.motifs.pfm 中的类)
Record(Bio.motifs.transfac 中的类)
Record(Bio.motifs.xms 中的类)
Record(Bio.PopGen.GenePop 中的类)
Record(Bio.PopGen.GenePop.LargeFileParser 中的类)
Record(Bio.SCOP.Cla 中的类)
Record(Bio.SCOP.Des 中的类)
Record(Bio.SCOP.Dom 中的类)
Record(Bio.SCOP.Hie 中的类)
Record(Bio.Sequencing.Phd 中的类)
Record(Bio.SwissProt 中的类)
Record(Bio.SwissProt.KeyWList 中的类)
Record(Bio.UniGene 中的类)
red() (Bio.Phylo.PhyloXMLIO.Writer 方法)
ref_db(Bio.SeqFeature.CompoundLocation 属性)
ref_db(Bio.SeqFeature.SeqFeature 属性)
reference() (Bio.Phylo.PhyloXMLIO.Parser 方法)
reference() (Bio.Phylo.PhyloXMLIO.Writer 方法)
reference_keys(Bio.motifs.transfac.Motif 属性)
Reference(Bio.ExPASy.Prodoc 中的类)
Reference(Bio.GenBank.Record 中的类)
Reference(Bio.Phylo.PhyloXML 中的类)
Reference(Bio.SeqFeature 中的类)
reference(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
reference(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
reference(Bio.Sequencing.Applications.BwaMemCommandline 属性)
reference(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
reference(Bio.Sequencing.Applications.BwaSamseCommandline 属性)
Reference(Bio.SwissProt 中的类)
refinewindow(Bio.Align.Applications.MuscleCommandline 属性)
refinew(Bio.Align.Applications.MuscleCommandline 属性)
refine(Bio.Align.Applications.MuscleCommandline 属性)
refmat()(在 Bio.PDB.vectors 模块中)
refresh(Bio.Phylo.Applications.FastTreeCommandline 属性)
ref(Bio.SeqFeature.CompoundLocation 属性)
ref(Bio.SeqFeature.SeqFeature 属性)
ref(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
ref(Bio.Sequencing.Applications.SamtoolsFaidxCommandline 属性)
region(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
register_ncbi_table()(在 Bio.Data.CodonTable 模块中)
regular(Bio.Emboss.Applications.FSeqBootCommandline 属性)
relations(Bio.KEGG.KGML.KGML_pathway.Pathway 属性)
Relation(Bio.KEGG.KGML.KGML_pathway 中的类)
relative_atom_re(Bio.PDB.internal_coords.IC_Residue 属性)
RelaxedPhylipIterator(Bio.AlignIO.PhylipIO 中的类)
RelaxedPhylipWriter(Bio.AlignIO.PhylipIO 中的类)
remote(Bio.Blast.Applications.NcbiblastnCommandline 属性)
remote(Bio.Blast.Applications.NcbiblastpCommandline 属性)
remote(Bio.Blast.Applications.NcbiblastxCommandline 属性)
remote(Bio.Blast.Applications.NcbideltablastCommandline 属性)
remote(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
remote(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
remote(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
remote(Bio.Blast.Applications.NcbitblastnCommandline 属性)
remote(Bio.Blast.Applications.NcbitblastxCommandline 属性)
remove() (Bio.Seq.MutableSeq 方法)
remove() (BioSQL.Loader.DatabaseRemover 方法)
remove_component() (Bio.KEGG.KGML.KGML_pathway.Entry 方法)
remove_edge() (Bio.Pathway.Rep.Graph.Graph 方法)
remove_edge() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
remove_entry() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
remove_graphics() (Bio.KEGG.KGML.KGML_pathway.Entry 方法)
remove_loci_by_name() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
remove_loci_by_position() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
remove_locus_by_name() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
remove_locus_by_name() (Bio.PopGen.GenePop.Record 方法)
remove_locus_by_position() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
remove_locus_by_position() (Bio.PopGen.GenePop.Record 方法)
remove_node() (Bio.Pathway.Rep.Graph.Graph 方法)
remove_node() (Bio.Pathway.Rep.MultiGraph.MultiGraph 方法)
remove_population() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
remove_population() (Bio.PopGen.GenePop.Record 方法)
remove_reaction() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
remove_reaction() (Bio.Pathway.System 方法)
remove_relation() (Bio.KEGG.KGML.KGML_pathway.Pathway 方法)
remove_succ() (Bio.Nexus.Nodes.Node 方法)
reorder(Bio.Align.Applications.MafftCommandline 属性)
repeats(Bio.Sequencing.Applications.NovoalignCommandline 属性)
replace() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
replace_entry()(在 Bio.NMR.xpktools 模块中)
replacement_dictionary() (Bio.Align.AlignInfo.SummaryInfo 方法)
report_IC()(在 Bio.PDB.ic_rebuild 模块中)
report(Bio.Sequencing.Applications.NovoalignCommandline 属性)
reps(Bio.Emboss.Applications.FSeqBootCommandline 属性)
reset() (Bio.Blast.NCBIXML.BlastParser 方法)
residue_depth()(在 Bio.PDB.ResidueDepth 模块中)
residue_dict() (Bio.NMR.xpktools.Peaklist 方法)
ResidueDepth(Bio.PDB.ResidueDepth 中的类)
residuenumber(Bio.Align.Applications.ClustalOmegaCommandline 属性)
Residues(Bio.SCOP.Residues 中的类)
Residue(Bio.PDB.Residue 中的类)
resname(Bio.PDB.internal_coords.AtomKey.fieldsDef 属性)
respos(Bio.PDB.internal_coords.AtomKey.fieldsDef 属性)
rest() (Bio.Nexus.Nexus.CharBuffer 方法)
Res(Bio.SCOP.Raf 中的类)
retree(Bio.Align.Applications.MafftCommandline 属性)
retrieve_pdb_file() (Bio.PDB.PDBList.PDBList 方法)
reverse() (Bio.Pathway.Reaction 方法)
reverse() (Bio.Seq.MutableSeq 方法)
reverse_complement() (Bio.motifs.Instances 方法)
reverse_complement() (Bio.motifs.matrix.GenericPositionMatrix 方法)
reverse_complement() (Bio.motifs.Motif 方法)
reverse_complement() (Bio.Seq.MutableSeq 方法)
reverse_complement() (Bio.Seq.Seq 方法)
reverse_complement() (Bio.Seq.UnknownSeq 方法)
reverse_complement() (Bio.SeqRecord.SeqRecord 方法)
reverse_complement()(在 Bio.Seq 模块中)
reverse_complement_rna() (Bio.Seq.UnknownSeq 方法)
reverseinput(Bio.Emboss.Applications.Primer3Commandline 属性)
reverse(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
reward(Bio.Blast.Applications.NcbiblastnCommandline 属性)
rewriteformat(Bio.Emboss.Applications.FSeqBootCommandline 属性)
rfind() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
rformat(Bio.Emboss.Applications.DiffseqCommandline 属性)
rformat(Bio.Emboss.Applications.ETandemCommandline 属性)
rformat(Bio.Emboss.Applications.FuzznucCommandline 属性)
rformat(Bio.Emboss.Applications.FuzzproCommandline 属性)
rho(Bio.Align.Applications.PrankCommandline 属性)
richards()(在 Bio.phenotype.pm_fitting 模块中)
rid(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
right_multiply() (Bio.PDB.vectors.Vector 方法)
rindex() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
rollback() (BioSQL.BioSeqDatabase.Adaptor 方法)
rollback() (BioSQL.BioSeqDatabase.DBServer 方法)
root1(Bio.Align.Applications.MuscleCommandline 属性)
root2(Bio.Align.Applications.MuscleCommandline 属性)
root_at_midpoint() (Bio.Phylo.BaseTree.Tree 方法)
root_with_outgroup() (Bio.Nexus.Trees.Tree 方法)
root_with_outgroup() (Bio.Phylo.BaseTree.Tree 方法)
root(Bio.Emboss.Applications.FConsenseCommandline 属性)
root(Bio.Phylo.BaseTree.Clade 属性)
rotaxis()(在 Bio.PDB.vectors 模块中)
rotaxis2m()(在 Bio.PDB.vectors 模块中)
rotmat()(在 Bio.PDB.vectors 模块中)
Round(Bio.Blast.Record 中的类)
rpsdb(Bio.Blast.Applications.NcbideltablastCommandline 属性)
rsplit() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
rstrip() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
rt(Bio.Sequencing.Ace 中的类)
run() (Bio.PDB.QCPSuperimposer.QCPSuperimposer 方法)
run() (Bio.Phylo.PAML.baseml.Baseml 方法)
run() (Bio.Phylo.PAML.codeml.Codeml 方法)
run() (Bio.Phylo.PAML.yn00.Yn00 方法)
run() (Bio.SVDSuperimposer.SVDSuperimposer 方法)
run_id(Bio.Phylo.Applications.PhymlCommandline 属性)
run_naccess()(在 Bio.PDB.NACCESS 模块中)
run_psea()(在 Bio.PDB.PSEA 模块中)
R(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
r(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
R(Bio.Sequencing.Applications.BwaMemCommandline 属性)
r(Bio.Sequencing.Applications.BwaMemCommandline 属性)
r(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
r(Bio.Sequencing.Applications.BwaSamseCommandline 属性)
r(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
R(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
r(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
r(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
R(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
r(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
S
safename()(在 Bio.Nexus.Nexus 模块中)
sai_file1(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
sai_file2(Bio.Sequencing.Applications.BwaSampeCommandline 属性)
sai_file(Bio.Sequencing.Applications.BwaSamseCommandline 属性)
salt_correction()(在 Bio.SeqUtils.MeltingTemp 模块中)
saltconc(Bio.Emboss.Applications.Primer3Commandline 属性)
sam_file(Bio.Sequencing.Applications.SamtoolsReheaderCommandline 属性)
SamtoolsCalmdCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsCatCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsFaidxCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsFixmateCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsIdxstatsCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsIndexCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsMergeCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsMpileupCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsPhaseCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsReheaderCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsRmdupCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsSortCommandline()(在 Bio.Sequencing.Applications 模块中)
SamtoolsTargetcutCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsVersion0xSortCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsVersion1xSortCommandline(Bio.Sequencing.Applications 中的类)
SamtoolsViewCommandline(Bio.Sequencing.Applications 中的类)
sanitize_name()(在 Bio.AlignIO.PhylipIO 模块中)
save() (Bio.Cluster.Record 方法)
save() (Bio.PDB.mmcifio.MMCIFIO 方法)
save() (Bio.PDB.PDBIO.PDBIO 方法)
save()(在 Bio.MarkovModel 模块中)
save_dtd_file() (Bio.Entrez.Parser.DataHandler 方法)
save_each_pssm(Bio.Blast.Applications.NcbideltablastCommandline 属性)
save_each_pssm(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
save_pssm_after_last_round(Bio.Blast.Applications.NcbideltablastCommandline 属性)
save_pssm_after_last_round(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
save_xsd_file() (Bio.Entrez.Parser.DataHandler 方法)
scalebranches(Bio.Align.Applications.PrankCommandline 属性)
ScaledDPAlgorithms(Bio.HMM.DynamicProgramming 中的类)
scan()(在 Bio.ExPASy.ScanProsite 模块中)
schemaHandler() (Bio.Entrez.Parser.DataHandler 方法)
scientific_name() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Scop(Bio.SCOP 中的类)
score() (Bio.Align.PairwiseAligner 方法)
ScoreDistribution(Bio.motifs.thresholds 中的类)
scorefile(Bio.Align.Applications.MuscleCommandline 属性)
Scorer(Bio.Phylo.TreeConstruction 中的类)
score(Bio.Align.Applications.ClustalwCommandline 属性)
search() (Bio.AlignIO.MafIO.MafIndex 方法)
search() (Bio.motifs.Instances 方法)
search() (Bio.motifs.matrix.PositionSpecificScoringMatrix 方法)
search() (Bio.PDB.NeighborSearch.NeighborSearch 方法)
search() (Bio.Phylo.TreeConstruction.NNITreeSearcher 方法)
search() (Bio.Phylo.TreeConstruction.TreeSearcher 方法)
search()(在 Bio.SCOP 模块中)
search()(在 Bio.TogoWS 模块中)
search_all() (Bio.PDB.NeighborSearch.NeighborSearch 方法)
search_count()(在 Bio.TogoWS 模块中)
search_iter()(在 Bio.TogoWS 模块中)
search_taxon() (Bio.Nexus.Trees.Tree 方法)
searchsp(Bio.Blast.Applications.NcbiblastnCommandline 属性)
searchsp(Bio.Blast.Applications.NcbiblastpCommandline 属性)
searchsp(Bio.Blast.Applications.NcbiblastxCommandline 属性)
searchsp(Bio.Blast.Applications.NcbideltablastCommandline 属性)
searchsp(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
searchsp(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
searchsp(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
searchsp(Bio.Blast.Applications.NcbitblastnCommandline 属性)
searchsp(Bio.Blast.Applications.NcbitblastxCommandline 属性)
search(Bio.Phylo.Applications.PhymlCommandline 属性)
secondary_structure_fraction() (Bio.SeqUtils.ProtParam.ProteinAnalysis 方法)
second(Bio.Phylo.Applications.FastTreeCommandline 属性)
secstrout(Bio.Align.Applications.ClustalwCommandline 属性)
seed(Bio.Align.Applications.ClustalwCommandline 属性)
seed(Bio.Align.Applications.MafftCommandline 属性)
seed(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
seed(Bio.Emboss.Applications.FDNAParsCommandline 属性)
seed(Bio.Emboss.Applications.FNeighborCommandline 属性)
seed(Bio.Emboss.Applications.FProtParsCommandline 属性)
seed(Bio.Emboss.Applications.FSeqBootCommandline 属性)
seed(Bio.Phylo.Applications.FastTreeCommandline 属性)
seek() (Bio.bgzf.BgzfReader 方法)
seek_position() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
seekable() (Bio.bgzf.BgzfReader 方法)
seekable() (Bio.bgzf.BgzfWriter 方法)
seguid()(在 Bio.SeqUtils.CheckSum 模块中)
seg(Bio.Blast.Applications.NcbiblastpCommandline 属性)
seg(Bio.Blast.Applications.NcbiblastxCommandline 属性)
seg(Bio.Blast.Applications.NcbideltablastCommandline 属性)
seg(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
seg(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
seg(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
seg(Bio.Blast.Applications.NcbitblastnCommandline 属性)
seg(Bio.Blast.Applications.NcbitblastxCommandline 属性)
select() (Bio.Align.substitution_matrices.Array 方法)
Select(Bio.PDB.PDBIO 中的类)
seq1()(在 Bio.SeqUtils 模块中)
seq3()(在 Bio.SeqUtils 模块中)
SEQ_TYPES(Bio.Align.Applications.TCoffeeCommandline 属性)
seqall(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
SeqFeature(Bio.SeqFeature 中的类)
seqidlist(Bio.Blast.Applications.NcbiblastnCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbiblastpCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbiblastxCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbideltablastCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbitblastnCommandline 属性)
seqidlist(Bio.Blast.Applications.NcbitblastxCommandline 属性)
SeqMapIndex(Bio.SCOP.Raf 中的类)
SeqMap(Bio.SCOP.Raf 中的类)
SeqmatchallCommandline(Bio.Emboss.Applications 中的类)
seqno_range(Bio.Align.Applications.ClustalwCommandline 属性)
seqnos(Bio.Align.Applications.ClustalwCommandline 属性)
SeqRecord(Bio.SeqRecord 中的类)
SeqretCommandline(Bio.Emboss.Applications 中的类)
seqtype(Bio.Align.Applications.ClustalOmegaCommandline 属性)
seqtype(Bio.Align.Applications.MuscleCommandline 属性)
seqtype(Bio.Emboss.Applications.FSeqBootCommandline 属性)
sequence() (Bio.Phylo.PhyloXMLIO.Writer 方法)
SEQUENCE_FORMAT(Bio.GenBank.Record.Record 属性)
SEQUENCE_HEADERS(Bio.GenBank.Scanner.EmblScanner 属性)
SEQUENCE_HEADERS(Bio.GenBank.Scanner.GenBankScanner 属性)
SEQUENCE_HEADERS(Bio.GenBank.Scanner.InsdcScanner 属性)
SEQUENCE_INDENT(Bio.SeqIO.InsdcIO.GenBankWriter 属性)
sequence_relation() (Bio.Phylo.PhyloXMLIO.Parser 方法)
sequence_relation() (Bio.Phylo.PhyloXMLIO.Writer 方法)
SequenceDataAbstractBaseClass(Bio.Seq 中的类)
SequenceIterator(Bio.SeqIO.Interfaces 中的类)
SequenceLine(Bio.UniGene 中的类)
SequenceRelation(Bio.Phylo.PhyloXML 中的类)
sequences(Bio.Align.Applications.ClustalwCommandline 属性)
sequences(Bio.Phylo.Applications.RaxmlCommandline 属性)
SequenceWriter(Bio.SeqIO.Interfaces 中的类)
sequence(Bio.Emboss.Applications.EInvertedCommandline 属性)
sequence(Bio.Emboss.Applications.ETandemCommandline 属性)
sequence(Bio.Emboss.Applications.FDNADistCommandline 属性)
sequence(Bio.Emboss.Applications.FDNAParsCommandline 属性)
sequence(Bio.Emboss.Applications.FProtDistCommandline 属性)
sequence(Bio.Emboss.Applications.FProtParsCommandline 属性)
sequence(Bio.Emboss.Applications.FSeqBootCommandline 属性)
sequence(Bio.Emboss.Applications.FuzznucCommandline 属性)
sequence(Bio.Emboss.Applications.FuzzproCommandline 属性)
sequence(Bio.Emboss.Applications.IepCommandline 属性)
sequence(Bio.Emboss.Applications.PalindromeCommandline 属性)
sequence(Bio.Emboss.Applications.Primer3Commandline 属性)
sequence(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
sequence(Bio.Emboss.Applications.SeqretCommandline 属性)
Sequence(Bio.Phylo.PhyloXML 中的类)
SequentialAlignmentWriter(Bio.AlignIO.Interfaces 中的类)
SequentialPhylipIterator(Bio.AlignIO.PhylipIO 中的类)
SequentialPhylipWriter(Bio.AlignIO.PhylipIO 中的类)
SequentialSequenceWriter(Bio.SeqIO.Interfaces 中的类)
sequential(Bio.Phylo.Applications.PhymlCommandline 属性)
SeqXmlIterator(Bio.SeqIO.SeqXmlIO 中的类)
SeqXmlWriter(Bio.SeqIO.SeqXmlIO 中的类)
Seq(Bio.Seq 中的类)
seq(Bio.SeqRecord.SeqRecord 属性)
seq(BioSQL.BioSeq.DBSeqRecord 属性)
set() (Bio.Nexus.Nexus.StepMatrix 方法)
set() (Bio.PDB.QCPSuperimposer.QCPSuperimposer 方法)
set() (Bio.SVDSuperimposer.SVDSuperimposer 方法)
set_accuracy_95()(在 Bio.PDB.internal_coords 模块中)
set_altloc() (Bio.PDB.Atom.Atom 方法)
set_angle() (Bio.PDB.internal_coords.IC_Residue 方法)
set_anisou() (Bio.PDB.Atom.Atom 方法)
set_anisou() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
set_atoms() (Bio.PDB.Superimposer.Superimposer 方法)
set_bfactor() (Bio.PDB.Atom.Atom 方法)
set_cai_index() (Bio.SeqUtils.CodonUsage.CodonAdaptationIndex 方法)
set_charge() (Bio.PDB.Atom.Atom 方法)
set_coord() (Bio.PDB.Atom.Atom 方法)
set_data() (Bio.Nexus.Nodes.Node 方法)
set_dict() (Bio.PDB.mmcifio.MMCIFIO 方法)
set_emission_pseudocount() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_emission_score() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_equal_probabilities() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_flexible() (Bio.PDB.internal_coords.IC_Residue 方法)
set_handle() (Bio.GenBank.Scanner.InsdcScanner 方法)
set_hbond() (Bio.PDB.internal_coords.IC_Residue 方法)
set_header() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
set_hedra() (Bio.PDB.internal_coords.Dihedron 方法)
set_hit_accession() (Bio.Blast.NCBIXML.BlastParser 方法)
set_hit_def() (Bio.Blast.NCBIXML.BlastParser 方法)
set_hit_id() (Bio.Blast.NCBIXML.BlastParser 方法)
set_hit_len() (Bio.Blast.NCBIXML.BlastParser 方法)
set_homog_trans_mtx()(在 Bio.PDB.vectors 模块中)
set_id() (Bio.Nexus.Nodes.Node 方法)
set_initial_probabilities() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_length() (Bio.PDB.internal_coords.Hedron 方法)
set_length() (Bio.PDB.internal_coords.IC_Residue 方法)
set_line_counter() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
set_occupancy() (Bio.PDB.Atom.Atom 方法)
set_original_taxon_order() (Bio.Nexus.Nexus.Nexus 方法)
set_parameter() (Bio.Application.AbstractCommandline 方法)
set_parent() (Bio.PDB.Atom.Atom 方法)
set_parent() (Bio.PDB.Entity.DisorderedEntityWrapper 方法)
set_parent() (Bio.PDB.Entity.Entity 方法)
set_prev() (Bio.Nexus.Nodes.Node 方法)
set_radius() (Bio.PDB.Atom.Atom 方法)
set_random_emission_probabilities() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_random_initial_probabilities() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_random_probabilities() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_random_transition_probabilities() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_residues() (Bio.PDB.internal_coords.IC_Chain 方法)
set_serial_number() (Bio.PDB.Atom.Atom 方法)
set_sigatm() (Bio.PDB.Atom.Atom 方法)
set_sigatm() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
set_siguij() (Bio.PDB.Atom.Atom 方法)
set_siguij() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
set_structure() (Bio.PDB.PDBIO.StructureIO 方法)
set_subtree() (Bio.Nexus.Trees.Tree 方法)
set_succ() (Bio.Nexus.Nodes.Node 方法)
set_symmetry() (Bio.PDB.StructureBuilder.StructureBuilder 方法)
set_transition_pseudocount() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_transition_score() (Bio.HMM.MarkovModel.MarkovModelBuilder 方法)
set_X_homog_rot_mtx()(在 Bio.PDB.vectors 模块中)
set_Y_homog_rot_mtx()(在 Bio.PDB.vectors 模块中)
set_Z_homog_rot_mtx()(在 Bio.PDB.vectors 模块中)
SffIterator(Bio.SeqIO.SffIO 中的类)
SffWriter(Bio.SeqIO.SffIO 中的类)
sformat(Bio.Emboss.Applications.SeqretCommandline 属性)
shape(Bio.Align.PairwiseAlignment 属性)
shortnames(Bio.Align.Applications.PrankCommandline 属性)
show_domain_hits(Bio.Blast.Applications.NcbideltablastCommandline 属性)
show_gis(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
show_gis(Bio.Blast.Applications.NcbiblastnCommandline 属性)
show_gis(Bio.Blast.Applications.NcbiblastpCommandline 属性)
show_gis(Bio.Blast.Applications.NcbiblastxCommandline 属性)
show_gis(Bio.Blast.Applications.NcbideltablastCommandline 属性)
show_gis(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
show_gis(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
show_gis(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
show_gis(Bio.Blast.Applications.NcbitblastnCommandline 属性)
show_gis(Bio.Blast.Applications.NcbitblastxCommandline 属性)
showtree(Bio.Align.Applications.PrankCommandline 属性)
showxml(Bio.Align.Applications.PrankCommandline 属性)
ShrakeRupley(Bio.PDB.SASA 中的类)
shuffle(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
similarity(Bio.Emboss.Applications.NeedleallCommandline 属性)
similarity(Bio.Emboss.Applications.NeedleCommandline 属性)
similarity(Bio.Emboss.Applications.WaterCommandline 属性)
SimpleFastaParser()(在 Bio.SeqIO.FastaIO 模块中)
sink() (Bio.Pathway.Network 方法)
sink_interactions() (Bio.Pathway.Network 方法)
six_frame_translations()(在 Bio.SeqUtils 模块中)
sixmerpair(Bio.Align.Applications.MafftCommandline 属性)
skip_header() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
skip_population() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
skip_whitespace() (Bio.Nexus.Nexus.CharBuffer 方法)
skipCharacterDataHandler() (Bio.Entrez.Parser.DataHandler 方法)
skipins(Bio.Align.Applications.PrankCommandline 属性)
slownni(Bio.Phylo.Applications.FastTreeCommandline 属性)
slow(Bio.Phylo.Applications.FastTreeCommandline 属性)
smin(Bio.Align.Applications.DialignCommandline 属性)
smoothscoreceil(Bio.Align.Applications.MuscleCommandline 属性)
smoothwindow(Bio.Align.Applications.MuscleCommandline 属性)
smprint() (Bio.Nexus.Nexus.StepMatrix 方法)
SnapGeneIterator(Bio.SeqIO.SnapGeneIO 中的类)
snucleotide(Bio.Emboss.Applications.NeedleallCommandline 属性)
snucleotide(Bio.Emboss.Applications.NeedleCommandline 属性)
snucleotide(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
snucleotide(Bio.Emboss.Applications.StretcherCommandline 属性)
snucleotide(Bio.Emboss.Applications.WaterCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbiblastnCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbiblastpCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbiblastxCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbideltablastCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbitblastnCommandline 属性)
soft_masking(Bio.Blast.Applications.NcbitblastxCommandline 属性)
solexa_quality_from_phred()(在 Bio.SeqIO.QualityIO 模块中)
somcluster() (Bio.Cluster.Record 方法)
somcluster()(在 Bio.Cluster 模块中)
sort() (Bio.Align.MultipleSeqAlignment 方法)
sort() (Bio.Align.PairwiseAlignment 方法)
sort() (Bio.Cluster.Tree 方法)
sort() (Bio.PDB.Residue.DisorderedResidue 方法)
sort() (Bio.Sequencing.Ace.ACEFileRecord 方法)
source() (Bio.Pathway.Network 方法)
source_interactions() (Bio.Pathway.Network 方法)
space(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
speciations() (Bio.Phylo.PhyloXMLIO.Writer 方法)
species() (Bio.Pathway.Network 方法)
species() (Bio.Pathway.Reaction 方法)
species() (Bio.Pathway.System 方法)
splicepenalty(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
splice(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
split() (Bio.Nexus.Trees.Tree 方法)
split() (Bio.Phylo.BaseTree.TreeMixin 方法)
split() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
split_in_loci() (Bio.PopGen.GenePop.Record 方法)
split_in_pops() (Bio.PopGen.GenePop.Record 方法)
split_jaspar_id()(在 Bio.motifs.jaspar 模块中)
split_virtual_offset()(在 Bio.bgzf 模块中)
spn(Bio.Align.Applications.MuscleCommandline 属性)
sprlength(Bio.Phylo.Applications.FastTreeCommandline 属性)
sprotein(Bio.Emboss.Applications.NeedleallCommandline 属性)
sprotein(Bio.Emboss.Applications.NeedleCommandline 属性)
sprotein(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
sprotein(Bio.Emboss.Applications.StretcherCommandline 属性)
sprotein(Bio.Emboss.Applications.WaterCommandline 属性)
spr(Bio.Phylo.Applications.FastTreeCommandline 属性)
spscore(Bio.Align.Applications.MuscleCommandline 属性)
sp(Bio.Align.Applications.MuscleCommandline 属性)
Sqlite_dbutils(BioSQL.DBUtils 中的类)
ss_to_index()(在 Bio.PDB.DSSP 模块中)
stable(Bio.Align.Applications.MuscleCommandline 属性)
StandardData(Bio.Nexus.StandardData 中的类)
stars(Bio.Align.Applications.DialignCommandline 属性)
start_codons(Bio.Data.CodonTable.CodonTable 属性)
start_read() (Bio.PopGen.GenePop.FileParser.FileRecord 方法)
startDBRefElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startDescriptionElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startDocument() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startElement() (Bio.ExPASy.ScanProsite.ContentHandler 方法)
startElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
startEntryElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startEntryFieldElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
starting_tree(Bio.Phylo.Applications.RaxmlCommandline 属性)
startNamespaceDeclHandler() (Bio.Entrez.Parser.DataHandler 方法)
startPropertyElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startRawElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
startSequenceElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startSeqXMLElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startSkipElementHandler() (Bio.Entrez.Parser.DataHandler 方法)
startSpeciesElement() (Bio.SeqIO.SeqXmlIO.ContentHandler 方法)
startswith() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
start(Bio.SeqFeature.CompoundLocation 属性)
start(Bio.SeqFeature.FeatureLocation 属性)
Statistics(Bio.Wise.dnal 中的类)
stats(Bio.Align.Applications.ClustalwCommandline 属性)
std() (Bio.motifs.matrix.PositionSpecificScoringMatrix 方法)
stdout(Bio.Emboss.Applications.DiffseqCommandline 属性)
stdout(Bio.Emboss.Applications.EInvertedCommandline 属性)
stdout(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
stdout(Bio.Emboss.Applications.ETandemCommandline 属性)
stdout(Bio.Emboss.Applications.FConsenseCommandline 属性)
stdout(Bio.Emboss.Applications.FDNADistCommandline 属性)
stdout(Bio.Emboss.Applications.FDNAParsCommandline 属性)
stdout(Bio.Emboss.Applications.FNeighborCommandline 属性)
stdout(Bio.Emboss.Applications.FProtDistCommandline 属性)
stdout(Bio.Emboss.Applications.FProtParsCommandline 属性)
stdout(Bio.Emboss.Applications.FSeqBootCommandline 属性)
stdout(Bio.Emboss.Applications.FTreeDistCommandline 属性)
stdout(Bio.Emboss.Applications.FuzznucCommandline 属性)
stdout(Bio.Emboss.Applications.FuzzproCommandline 属性)
stdout(Bio.Emboss.Applications.IepCommandline 属性)
stdout(Bio.Emboss.Applications.NeedleallCommandline 属性)
stdout(Bio.Emboss.Applications.NeedleCommandline 属性)
stdout(Bio.Emboss.Applications.PalindromeCommandline 属性)
stdout(Bio.Emboss.Applications.Primer3Commandline 属性)
stdout(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
stdout(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
stdout(Bio.Emboss.Applications.SeqretCommandline 属性)
stdout(Bio.Emboss.Applications.StretcherCommandline 属性)
stdout(Bio.Emboss.Applications.TranalignCommandline 属性)
stdout(Bio.Emboss.Applications.WaterCommandline 属性)
stdo(Bio.Align.Applications.DialignCommandline 属性)
StepMatrix(Bio.Nexus.Nexus 中的类)
stochiometry() (Bio.Pathway.System 方法)
StockholmIterator(Bio.AlignIO.StockholmIO 中的类)
StockholmWriter(Bio.AlignIO.StockholmIO 中的类)
stop_codons(Bio.Data.CodonTable.CodonTable 属性)
store() (Bio.Entrez.Parser.DictionaryElement 方法)
store() (Bio.Entrez.Parser.ListElement 方法)
strandendin(Bio.Align.Applications.ClustalwCommandline 属性)
strandendout(Bio.Align.Applications.ClustalwCommandline 属性)
strandgap(Bio.Align.Applications.ClustalwCommandline 属性)
strand(Bio.Blast.Applications.NcbiblastnCommandline 属性)
strand(Bio.Blast.Applications.NcbiblastxCommandline 属性)
strand(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
strand(Bio.Blast.Applications.NcbitblastxCommandline 属性)
strand(Bio.SeqFeature.CompoundLocation 属性)
strand(Bio.SeqFeature.FeatureLocation 属性)
strand(Bio.SeqFeature.SeqFeature 属性)
StreamModeError
StretcherCommandline(Bio.Emboss.Applications 中的类)
strict_consensus()(在 Bio.Phylo.Consensus 模块中)
StringElement(Bio.Entrez.Parser 中的类)
strings(Bio.ExPASy.ScanProsite.ContentHandler 属性)
strip() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
structure_rebuild_test()(在 Bio.PDB.ic_rebuild 模块中)
StructureAlignment(Bio.PDB.StructureAlignment 中的类)
StructureBuilder(Bio.PDB.StructureBuilder 中的类)
STRUCTURED_COMMENT_DELIM(Bio.GenBank.Scanner.GenBankScanner 属性)
STRUCTURED_COMMENT_DELIM(Bio.SeqIO.InsdcIO.GenBankWriter 属性)
STRUCTURED_COMMENT_END(Bio.GenBank.Scanner.GenBankScanner 属性)
STRUCTURED_COMMENT_END(Bio.SeqIO.InsdcIO.GenBankWriter 属性)
STRUCTURED_COMMENT_START(Bio.GenBank.Scanner.GenBankScanner 属性)
STRUCTURED_COMMENT_START(Bio.SeqIO.InsdcIO.GenBankWriter 属性)
StructureIO(Bio.PDB.PDBIO 中的类)
Structure(Bio.PDB.Structure 中的类)
STSLine(Bio.UniGene 中的类)
style(Bio.Emboss.Applications.FTreeDistCommandline 属性)
subject_loc(Bio.Blast.Applications.NcbiblastnCommandline 属性)
subject_loc(Bio.Blast.Applications.NcbiblastpCommandline 属性)
subject_loc(Bio.Blast.Applications.NcbiblastxCommandline 属性)
subject_loc(Bio.Blast.Applications.NcbideltablastCommandline 属性)
subject_loc(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
subject_loc(Bio.Blast.Applications.NcbitblastnCommandline 属性)
subject_loc(Bio.Blast.Applications.NcbitblastxCommandline 属性)
subject(Bio.Blast.Applications.NcbiblastnCommandline 属性)
subject(Bio.Blast.Applications.NcbiblastpCommandline 属性)
subject(Bio.Blast.Applications.NcbiblastxCommandline 属性)
subject(Bio.Blast.Applications.NcbideltablastCommandline 属性)
subject(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
subject(Bio.Blast.Applications.NcbitblastnCommandline 属性)
subject(Bio.Blast.Applications.NcbitblastxCommandline 属性)
substitutions(Bio.Align.MultipleSeqAlignment 属性)
substitutions(Bio.Align.PairwiseAlignment 属性)
substrates(Bio.KEGG.KGML.KGML_pathway.Reaction 属性)
subtract_control() (Bio.phenotype.phen_micro.PlateRecord 方法)
sueff(Bio.Align.Applications.MuscleCommandline 属性)
sum() (Bio.Nexus.Nexus.StepMatrix 方法)
sum_branchlength() (Bio.Nexus.Trees.Tree 方法)
sum_statistics(Bio.Blast.Applications.NcbiblastnCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbiblastpCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbiblastxCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbideltablastCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbitblastnCommandline 属性)
sum_statistics(Bio.Blast.Applications.NcbitblastxCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbiblastnCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbiblastpCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbiblastxCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbideltablastCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbitblastnCommandline 属性)
sum_stats(Bio.Blast.Applications.NcbitblastxCommandline 属性)
SummaryInfo(Bio.Align.AlignInfo 中的类)
Superimposer(Bio.PDB.Superimposer 中的类)
SVDSuperimposer(Bio.SVDSuperimposer 中的类)
sv(Bio.Align.Applications.MuscleCommandline 属性)
SwissIterator()(在 Bio.SeqIO.SwissIO 模块中)
SwissProtParserError
symbol() (Bio.Phylo.PhyloXMLIO.Writer 方法)
synonym() (Bio.Phylo.PhyloXMLIO.Writer 方法)
System(Bio.Pathway 中的类)
s(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
S(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
S(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
S(Bio.Sequencing.Applications.SamtoolsRmdupCommandline 属性)
s(Bio.Sequencing.Applications.SamtoolsRmdupCommandline 属性)
S(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
T
TabIterator(Bio.SeqIO.TabIO 中的类)
table(Bio.Emboss.Applications.TranalignCommandline 属性)
TabWriter(Bio.SeqIO.TabIO 中的类)
target(Bio.Emboss.Applications.Primer3Commandline 属性)
task(Bio.Blast.Applications.NcbiblastnCommandline 属性)
task(Bio.Blast.Applications.NcbiblastpCommandline 属性)
task(Bio.Blast.Applications.NcbiblastxCommandline 属性)
task(Bio.Blast.Applications.NcbitblastnCommandline 属性)
task(Bio.Emboss.Applications.Primer3Commandline 属性)
taxid_map(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
taxid(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
taxonomy() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Taxonomy(Bio.Phylo.PhyloXML 中的类)
taxonomy(Bio.Phylo.PhyloXML.Clade 属性)
ta(Bio.Align.Applications.DialignCommandline 属性)
TCoffeeCommandline(Bio.Align.Applications 中的类)
tell() (Bio.bgzf.BgzfReader 方法)
tell() (Bio.bgzf.BgzfWriter 方法)
template_length(Bio.Blast.Applications.NcbiblastnCommandline 属性)
template_type(Bio.Blast.Applications.NcbiblastnCommandline 属性)
termgap(Bio.Align.Applications.PrankCommandline 属性)
terminal_gap_to_missing() (Bio.Nexus.Nexus.Nexus 方法)
terminalgap(Bio.Align.Applications.ClustalwCommandline 属性)
test_genic_diff_all() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_genic_diff_pair() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_genotypic_diff_all() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_genotypic_diff_pair() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_global_hz_deficiency() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_global_hz_excess() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_hw_global() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
test_hw_pop() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
test_ld() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_ld_all_pair() (Bio.PopGen.GenePop.EasyController.EasyController 方法)
test_pop_hz_deficiency() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_pop_hz_excess() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test_pop_hz_prob() (Bio.PopGen.GenePop.Controller.GenePopController 方法)
test(Bio.Emboss.Applications.FSeqBootCommandline 属性)
thorough(Bio.Emboss.Applications.FDNAParsCommandline 属性)
threads(Bio.Align.Applications.ClustalOmegaCommandline 属性)
threads(Bio.Phylo.Applications.RaxmlCommandline 属性)
thread(Bio.Align.Applications.MafftCommandline 属性)
three_to_index()(在 Bio.PDB.Polypeptide 模块中)
three_to_one()(在 Bio.PDB.Polypeptide 模块中)
threshold_balanced() (Bio.motifs.thresholds.ScoreDistribution 方法)
threshold_fnr() (Bio.motifs.thresholds.ScoreDistribution 方法)
threshold_fpr() (Bio.motifs.thresholds.ScoreDistribution 方法)
threshold_patser() (Bio.motifs.thresholds.ScoreDistribution 方法)
threshold(Bio.Blast.Applications.NcbiblastpCommandline 属性)
threshold(Bio.Blast.Applications.NcbiblastxCommandline 属性)
threshold(Bio.Blast.Applications.NcbideltablastCommandline 属性)
threshold(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
threshold(Bio.Blast.Applications.NcbitblastnCommandline 属性)
threshold(Bio.Blast.Applications.NcbitblastxCommandline 属性)
threshold(Bio.Emboss.Applications.EInvertedCommandline 属性)
threshold(Bio.Emboss.Applications.ETandemCommandline 属性)
threshold(Bio.Emboss.Applications.FDNAParsCommandline 属性)
threshold(Bio.Emboss.Applications.FProtParsCommandline 属性)
threshold(Bio.Sequencing.Applications.NovoalignCommandline 属性)
thresh(Bio.Emboss.Applications.FDNAParsCommandline 属性)
thresh(Bio.Emboss.Applications.FProtParsCommandline 属性)
thr(Bio.Align.Applications.DialignCommandline 属性)
title(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
Tm_GC()(在 Bio.SeqUtils.MeltingTemp 模块中)
Tm_NN()(在 Bio.SeqUtils.MeltingTemp 模块中)
Tm_staluc()(在 Bio.SeqUtils.MeltingTemp 模块中)
Tm_Wallace()(在 Bio.SeqUtils.MeltingTemp 模块中)
tm(Bio.Align.Applications.MafftCommandline 属性)
tname() (BioSQL.DBUtils.Generic_dbutils 方法)
to_alignment() (Bio.Phylo.PhyloXML.Phylogeny 方法)
to_dict() (Bio.motifs.jaspar.Record 方法)
to_dict()(在 Bio.SearchIO 模块中)
to_dict()(在 Bio.SeqIO 模块中)
to_generic() (Bio.Blast.Record.MultipleAlignment 方法)
to_hex() (Bio.Phylo.BaseTree.BranchColor 方法)
to_phylogeny() (Bio.Phylo.PhyloXML.Clade 方法)
to_phyloxml_container() (Bio.Phylo.PhyloXML.Phylogeny 方法)
to_rgb() (Bio.Phylo.BaseTree.BranchColor 方法)
to_seqfeature() (Bio.Phylo.PhyloXML.ProteinDomain 方法)
to_seqrecord() (Bio.Phylo.PhyloXML.Sequence 方法)
to_string() (Bio.Nexus.Trees.Tree 方法)
to_strings() (Bio.Phylo.NewickIO.Writer 方法)
toClaRecord() (Bio.SCOP.Domain 方法)
toDesRecord() (Bio.SCOP.Domain 方法)
toDesRecord() (Bio.SCOP.Node 方法)
toHieRecord() (Bio.SCOP.Node 方法)
toMultipleSeqAlignment() (Bio.codonalign.codonalignment.CodonAlignment 方法)
tomutable() (Bio.Seq.Seq 方法)
topdiags(Bio.Align.Applications.ClustalwCommandline 属性)
topm(Bio.Phylo.Applications.FastTreeCommandline 属性)
top(Bio.Phylo.Applications.FastTreeCommandline 属性)
toSeq() (Bio.codonalign.codonseq.CodonSeq 方法)
toseq() (Bio.Seq.MutableSeq 方法)
tossgaps(Bio.Align.Applications.ClustalwCommandline 属性)
total_branch_length() (Bio.Phylo.BaseTree.TreeMixin 方法)
trace() (Bio.Nexus.Nodes.Chain 方法)
trace() (Bio.Phylo.BaseTree.TreeMixin 方法)
train() (Bio.HMM.Trainer.BaumWelchTrainer 方法)
train() (Bio.HMM.Trainer.KnownStateTrainer 方法)
train()(在 Bio.kNN 模块中)
train()(在 Bio.LogisticRegression 模块中)
train()(在 Bio.MaxEntropy 模块中)
train()(在 Bio.NaiveBayes 模块中)
train_bw()(在 Bio.MarkovModel 模块中)
train_visible()(在 Bio.MarkovModel 模块中)
TrainingSequence(Bio.HMM.Trainer 中的类)
train(Bio.Align.Applications.ProbconsCommandline 属性)
TranalignCommandline(Bio.Emboss.Applications 中的类)
transcribe() (Bio.Seq.UnknownSeq 方法)
transcribe()(在 Bio.Seq 模块中)
transform() (Bio.PDB.Atom.Atom 方法)
transform() (Bio.PDB.Atom.DisorderedAtom 方法)
transform() (Bio.PDB.Entity.Entity 方法)
transformation() (Bio.Nexus.Nexus.StepMatrix 方法)
transitions_from() (Bio.HMM.MarkovModel.HiddenMarkovModel 方法)
transitions_to() (Bio.HMM.MarkovModel.HiddenMarkovModel 方法)
translate() (Bio.codonalign.codonseq.CodonSeq 方法)
translate() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
translate() (Bio.Seq.UnknownSeq 方法)
translate() (Bio.SeqFeature.SeqFeature 方法)
translate() (Bio.SeqRecord.SeqRecord 方法)
translate()(在 Bio.Seq 模块中)
translate(Bio.Align.Applications.PrankCommandline 属性)
TranslationError
transpose() (Bio.Align.substitution_matrices.Array 方法)
transversion(Bio.Emboss.Applications.FDNAParsCommandline 属性)
transweight(Bio.Align.Applications.ClustalwCommandline 属性)
tree1(Bio.Align.Applications.MuscleCommandline 属性)
tree2(Bio.Align.Applications.MuscleCommandline 属性)
treecluster() (Bio.Cluster.Record 方法)
treecluster()(在 Bio.Cluster 模块中)
TreeConstructor(Bio.Phylo.TreeConstruction 中的类)
TreeElement(Bio.Phylo.BaseTree 中的类)
TreeError
TreeMixin(Bio.Phylo.BaseTree 中的类)
treeout(Bio.Align.Applications.MafftCommandline 属性)
treeprint(Bio.Emboss.Applications.FNeighborCommandline 属性)
TreeSearcher(Bio.Phylo.TreeConstruction 中的类)
treetype(Bio.Emboss.Applications.FNeighborCommandline 属性)
tree(Bio.Align.Applications.ClustalwCommandline 属性)
tree(Bio.Align.Applications.PrankCommandline 属性)
Tree(Bio.Cluster 中的类)
Tree(Bio.Nexus.Trees 中的类)
Tree(Bio.Phylo.BaseTree 中的类)
Tree(Bio.Phylo.CDAO 中的类)
Tree(Bio.Phylo.Newick 中的类)
Tree(Bio.Phylo.NeXML 中的类)
trimming(Bio.Sequencing.Applications.NovoalignCommandline 属性)
trout(Bio.Emboss.Applications.FConsenseCommandline 属性)
trout(Bio.Emboss.Applications.FDNAParsCommandline 属性)
trout(Bio.Emboss.Applications.FNeighborCommandline 属性)
trout(Bio.Emboss.Applications.FProtParsCommandline 属性)
truncate(Bio.Sequencing.Applications.NovoalignCommandline 属性)
ts_tv_ratio(Bio.Phylo.Applications.PhymlCommandline 属性)
ttratio(Bio.Emboss.Applications.FDNADistCommandline 属性)
ttratio(Bio.Emboss.Applications.FProtDistCommandline 属性)
twice(Bio.Align.Applications.PrankCommandline 属性)
TwoBitIterator(Bio.SeqIO.TwoBitIO 中的类)
type() (Bio.Phylo.PhyloXMLIO.Writer 方法)
types(Bio.Phylo.PhyloXML.Sequence 属性)
type(Bio.Align.Applications.ClustalwCommandline 属性)
type(Bio.Align.Applications.TCoffeeCommandline 属性)
t(Bio.Align.Applications.PrankCommandline 属性)
t(Bio.Sequencing.Applications.BwaAlignCommandline 属性)
T(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
t(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
T(Bio.Sequencing.Applications.BwaMemCommandline 属性)
t(Bio.Sequencing.Applications.BwaMemCommandline 属性)
T(Bio.Sequencing.Applications.SamtoolsVersion1xSortCommandline 属性)
t(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
U
UncertainPosition(Bio.SeqFeature 中的类)
unconverted(Bio.Sequencing.Applications.NovoalignCommandline 属性)
UndefinedSequenceError
unfold_entities()(在 Bio.PDB.Selection 模块中)
ungap() (Bio.codonalign.codonseq.CodonSeq 方法)
ungap() (Bio.Seq.Seq 方法)
ungap() (Bio.Seq.UnknownSeq 方法)
ungapped(Bio.Blast.Applications.NcbiblastnCommandline 属性)
ungapped(Bio.Blast.Applications.NcbiblastpCommandline 属性)
ungapped(Bio.Blast.Applications.NcbiblastxCommandline 属性)
ungapped(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
ungapped(Bio.Blast.Applications.NcbitblastnCommandline 属性)
uniform(Bio.Emboss.Applications.ETandemCommandline 属性)
UniprotIterator()(在 Bio.SeqIO.UniprotIO 模块中)
uniqueify()(在 Bio.PDB.Selection 模块中)
UnknownPosition(Bio.SeqFeature 中的类)
UnknownSeq(Bio.Seq 中的类)
unlink() (Bio.Nexus.Nodes.Chain 方法)
unroot() (Bio.Nexus.Trees.Tree 方法)
update() (Bio.Align.substitution_matrices.Array 方法)
update_emissions() (Bio.HMM.Trainer.BaumWelchTrainer 方法)
update_pdb() (Bio.PDB.PDBList.PDBList 方法)
update_transitions() (Bio.HMM.Trainer.BaumWelchTrainer 方法)
upgma() (Bio.Phylo.TreeConstruction.DistanceTreeConstructor 方法)
upper() (Bio.Seq.SequenceDataAbstractBaseClass 方法)
upper() (Bio.Seq.UnknownSeq 方法)
upper() (Bio.SeqRecord.SeqRecord 方法)
uri() (Bio.Phylo.PhyloXMLIO.Parser 方法)
uri() (Bio.Phylo.PhyloXMLIO.Writer 方法)
Uri(Bio.Phylo.PhyloXML 中的类)
use_index(Bio.Blast.Applications.NcbiblastnCommandline 属性)
use_sw_tback(Bio.Blast.Applications.NcbiblastpCommandline 属性)
use_sw_tback(Bio.Blast.Applications.NcbiblastxCommandline 属性)
use_sw_tback(Bio.Blast.Applications.NcbideltablastCommandline 属性)
use_sw_tback(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
use_sw_tback(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
use_sw_tback(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
use_sw_tback(Bio.Blast.Applications.NcbitblastnCommandline 属性)
usekimura(Bio.Align.Applications.ClustalOmegaCommandline 属性)
uselogs(Bio.Align.Applications.PrankCommandline 属性)
usetree1(Bio.Align.Applications.ClustalwCommandline 属性)
usetree2(Bio.Align.Applications.ClustalwCommandline 属性)
usetree(Bio.Align.Applications.ClustalwCommandline 属性)
usetree(Bio.Align.Applications.MuscleCommandline 属性)
U(Bio.Sequencing.Applications.BwaMemCommandline 属性)
u(Bio.Sequencing.Applications.SamtoolsCalmdCommandline 属性)
u(Bio.Sequencing.Applications.SamtoolsMergeCommandline 属性)
u(Bio.Sequencing.Applications.SamtoolsMpileupCommandline 属性)
u(Bio.Sequencing.Applications.SamtoolsViewCommandline 属性)
V
ValidationError
value() (Bio.Phylo.PhyloXMLIO.Writer 方法)
values() (Bio.Align.substitution_matrices.Array 方法)
values() (Bio.Phylo.PhyloXML.Events 方法)
values() (BioSQL.BioSeqDatabase.BioSeqDatabase 方法)
values() (BioSQL.BioSeqDatabase.DBServer 方法)
variation(Bio.Sequencing.Applications.NovoalignCommandline 属性)
vector_to_axis()(在 Bio.PDB.vectors 模块中)
Vector(Bio.PDB.vectors 中的类)
verbose(Bio.Align.Applications.ClustalOmegaCommandline 属性)
verbose(Bio.Align.Applications.MSAProbsCommandline 属性)
verbose(Bio.Align.Applications.MuscleCommandline 属性)
verbose(Bio.Align.Applications.ProbconsCommandline 属性)
verbose(Bio.Emboss.Applications.DiffseqCommandline 属性)
verbose(Bio.Emboss.Applications.EInvertedCommandline 属性)
verbose(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
verbose(Bio.Emboss.Applications.ETandemCommandline 属性)
verbose(Bio.Emboss.Applications.FConsenseCommandline 属性)
verbose(Bio.Emboss.Applications.FDNADistCommandline 属性)
verbose(Bio.Emboss.Applications.FDNAParsCommandline 属性)
verbose(Bio.Emboss.Applications.FNeighborCommandline 属性)
verbose(Bio.Emboss.Applications.FProtDistCommandline 属性)
verbose(Bio.Emboss.Applications.FProtParsCommandline 属性)
verbose(Bio.Emboss.Applications.FSeqBootCommandline 属性)
verbose(Bio.Emboss.Applications.FTreeDistCommandline 属性)
verbose(Bio.Emboss.Applications.FuzznucCommandline 属性)
verbose(Bio.Emboss.Applications.FuzzproCommandline 属性)
verbose(Bio.Emboss.Applications.IepCommandline 属性)
verbose(Bio.Emboss.Applications.NeedleallCommandline 属性)
verbose(Bio.Emboss.Applications.NeedleCommandline 属性)
verbose(Bio.Emboss.Applications.PalindromeCommandline 属性)
verbose(Bio.Emboss.Applications.Primer3Commandline 属性)
verbose(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
verbose(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
verbose(Bio.Emboss.Applications.SeqretCommandline 属性)
verbose(Bio.Emboss.Applications.StretcherCommandline 属性)
verbose(Bio.Emboss.Applications.TranalignCommandline 属性)
verbose(Bio.Emboss.Applications.WaterCommandline 属性)
version(Bio.Align.Applications.ClustalOmegaCommandline 属性)
version(Bio.Align.Applications.MSAProbsCommandline 属性)
version(Bio.Align.Applications.MuscleCommandline 属性)
version(Bio.Blast.Applications.NcbiblastformatterCommandline 属性)
version(Bio.Blast.Applications.NcbiblastnCommandline 属性)
version(Bio.Blast.Applications.NcbiblastpCommandline 属性)
version(Bio.Blast.Applications.NcbiblastxCommandline 属性)
version(Bio.Blast.Applications.NcbideltablastCommandline 属性)
version(Bio.Blast.Applications.NcbimakeblastdbCommandline 属性)
version(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
version(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
version(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
version(Bio.Blast.Applications.NcbitblastnCommandline 属性)
version(Bio.Blast.Applications.NcbitblastxCommandline 属性)
version(Bio.motifs.jaspar.Motif 属性)
version(Bio.Phylo.Applications.RaxmlCommandline 属性)
viterbi() (Bio.HMM.MarkovModel.HiddenMarkovModel 方法)
viterbi(Bio.Align.Applications.ProbconsCommandline 属性)
v(Bio.Sequencing.Applications.BwaMemCommandline 属性)
W
wag(Bio.Phylo.Applications.FastTreeCommandline 属性)
warning(Bio.Emboss.Applications.DiffseqCommandline 属性)
warning(Bio.Emboss.Applications.EInvertedCommandline 属性)
warning(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
warning(Bio.Emboss.Applications.ETandemCommandline 属性)
warning(Bio.Emboss.Applications.FConsenseCommandline 属性)
warning(Bio.Emboss.Applications.FDNADistCommandline 属性)
warning(Bio.Emboss.Applications.FDNAParsCommandline 属性)
warning(Bio.Emboss.Applications.FNeighborCommandline 属性)
warning(Bio.Emboss.Applications.FProtDistCommandline 属性)
warning(Bio.Emboss.Applications.FProtParsCommandline 属性)
warning(Bio.Emboss.Applications.FSeqBootCommandline 属性)
warning(Bio.Emboss.Applications.FTreeDistCommandline 属性)
warning(Bio.Emboss.Applications.FuzznucCommandline 属性)
warning(Bio.Emboss.Applications.FuzzproCommandline 属性)
warning(Bio.Emboss.Applications.IepCommandline 属性)
warning(Bio.Emboss.Applications.NeedleallCommandline 属性)
warning(Bio.Emboss.Applications.NeedleCommandline 属性)
warning(Bio.Emboss.Applications.PalindromeCommandline 属性)
warning(Bio.Emboss.Applications.Primer3Commandline 属性)
warning(Bio.Emboss.Applications.PrimerSearchCommandline 属性)
warning(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
warning(Bio.Emboss.Applications.SeqretCommandline 属性)
warning(Bio.Emboss.Applications.StretcherCommandline 属性)
warning(Bio.Emboss.Applications.TranalignCommandline 属性)
warning(Bio.Emboss.Applications.WaterCommandline 属性)
WaterCommandline(Bio.Emboss.Applications 中的类)
wa(Bio.Sequencing.Ace 中的类)
weblogo() (Bio.motifs.Motif 方法)
weight1(Bio.Align.Applications.MuscleCommandline 属性)
weight2(Bio.Align.Applications.MuscleCommandline 属性)
weight_filename(Bio.Phylo.Applications.RaxmlCommandline 属性)
weighted_stepmatrix() (Bio.Nexus.Nexus.Nexus 方法)
weighting() (Bio.Nexus.Nexus.StepMatrix 方法)
weighti(Bio.Align.Applications.MafftCommandline 属性)
weights(Bio.Emboss.Applications.FDNADistCommandline 属性)
weights(Bio.Emboss.Applications.FDNAParsCommandline 属性)
weights(Bio.Emboss.Applications.FProtDistCommandline 属性)
weights(Bio.Emboss.Applications.FProtParsCommandline 属性)
weights(Bio.Emboss.Applications.FSeqBootCommandline 属性)
WellRecord(Bio.phenotype.phen_micro 中的类)
whichcode(Bio.Emboss.Applications.FProtDistCommandline 属性)
whichcode(Bio.Emboss.Applications.FProtParsCommandline 属性)
width() (Bio.Phylo.PhyloXMLIO.Writer 方法)
width(Bio.Emboss.Applications.Est2GenomeCommandline 属性)
width(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
window_masker_db(Bio.Blast.Applications.NcbiblastnCommandline 属性)
window_masker_taxid(Bio.Blast.Applications.NcbiblastnCommandline 属性)
window_size(Bio.Blast.Applications.NcbiblastnCommandline 属性)
window_size(Bio.Blast.Applications.NcbiblastpCommandline 属性)
window_size(Bio.Blast.Applications.NcbiblastxCommandline 属性)
window_size(Bio.Blast.Applications.NcbideltablastCommandline 属性)
window_size(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
window_size(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
window_size(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
window_size(Bio.Blast.Applications.NcbitblastnCommandline 属性)
window_size(Bio.Blast.Applications.NcbitblastxCommandline 属性)
window(Bio.Align.Applications.ClustalwCommandline 属性)
WithinPosition(Bio.SeqFeature 中的类)
word_size(Bio.Blast.Applications.NcbiblastnCommandline 属性)
word_size(Bio.Blast.Applications.NcbiblastpCommandline 属性)
word_size(Bio.Blast.Applications.NcbiblastxCommandline 属性)
word_size(Bio.Blast.Applications.NcbideltablastCommandline 属性)
word_size(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
word_size(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
word_size(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
word_size(Bio.Blast.Applications.NcbitblastnCommandline 属性)
word_size(Bio.Blast.Applications.NcbitblastxCommandline 属性)
wordsize(Bio.Emboss.Applications.DiffseqCommandline 属性)
wordsize(Bio.Emboss.Applications.SeqmatchallCommandline 属性)
working_dir(Bio.Phylo.Applications.RaxmlCommandline 属性)
wrap(Bio.Align.Applications.ClustalOmegaCommandline 属性)
write() (Bio.bgzf.BgzfWriter 方法)
write() (Bio.phenotype.phen_micro.JsonWriter 方法)
write() (Bio.Phylo.NewickIO.Writer 方法)
write() (Bio.Phylo.NeXMLIO.Writer 方法)
write() (Bio.Phylo.PhyloXMLIO.Writer 方法)
write()(在 Bio.AlignIO 模块中)
write()(在 Bio.motifs 模块中)
write()(在 Bio.motifs.clusterbuster 模块中)
write()(在 Bio.motifs.jaspar 模块中)
write()(在 Bio.motifs.pfm 模块中)
write()(在 Bio.motifs.transfac 模块中)
write()(在 Bio.phenotype 模块中)
write()(在 Bio.Phylo.NewickIO 模块中)
write()(在 Bio.Phylo.NeXMLIO 模块中)
write()(在 Bio.Phylo.NexusIO 模块中)
write()(在 Bio.Phylo.PhyloXMLIO 模块中)
write()(在 Bio.SearchIO 模块中)
write()(在 Bio.SeqIO 模块中)
write_alignment() (Bio.AlignIO.ClustalIO.ClustalWriter 方法)
write_alignment() (Bio.AlignIO.Interfaces.SequentialAlignmentWriter 方法)
write_alignment() (Bio.AlignIO.MafIO.MafWriter 方法)
write_alignment() (Bio.AlignIO.MauveIO.MauveWriter 方法)
write_alignment() (Bio.AlignIO.NexusIO.NexusWriter 方法)
write_alignment() (Bio.AlignIO.PhylipIO.PhylipWriter 方法)
write_alignment() (Bio.AlignIO.PhylipIO.RelaxedPhylipWriter 方法)
write_alignment() (Bio.AlignIO.PhylipIO.SequentialPhylipWriter 方法)
write_alignment() (Bio.AlignIO.StockholmIO.StockholmWriter 方法)
write_cal(Bio.Sequencing.Applications.NovoalignCommandline 属性)
write_cla() (Bio.SCOP.Scop 方法)
write_cla_sql() (Bio.SCOP.Scop 方法)
write_ctl_file() (Bio.Phylo.PAML.baseml.Baseml 方法)
write_ctl_file() (Bio.Phylo.PAML.codeml.Codeml 方法)
write_ctl_file() (Bio.Phylo.PAML.yn00.Yn00 方法)
write_des() (Bio.SCOP.Scop 方法)
write_des_sql() (Bio.SCOP.Scop 方法)
write_file() (Bio.AlignIO.Interfaces.AlignmentWriter 方法)
write_file() (Bio.AlignIO.Interfaces.SequentialAlignmentWriter 方法)
write_file() (Bio.AlignIO.NexusIO.NexusWriter 方法)
write_file() (Bio.SearchIO.BlastIO.blast_tab.BlastTabWriter 方法)
write_file() (Bio.SearchIO.BlastIO.blast_xml.BlastXmlWriter 方法)
write_file() (Bio.SearchIO.BlatIO.BlatPslWriter 方法)
write_file() (Bio.SearchIO.HmmerIO.hmmer3_domtab.Hmmer3DomtabHmmhitWriter 方法)
write_file() (Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabWriter 方法)
write_file() (Bio.SeqIO.Interfaces.SequenceWriter 方法)
write_file() (Bio.SeqIO.Interfaces.SequentialSequenceWriter 方法)
write_file() (Bio.SeqIO.NibIO.NibWriter 方法)
write_file() (Bio.SeqIO.SffIO.SffWriter 方法)
write_file() (Bio.SeqIO.XdnaIO.XdnaWriter 方法)
write_footer() (Bio.AlignIO.Interfaces.SequentialAlignmentWriter 方法)
write_footer() (Bio.SeqIO.Interfaces.SequenceWriter 方法)
write_footer() (Bio.SeqIO.Interfaces.SequentialSequenceWriter 方法)
write_footer() (Bio.SeqIO.SeqXmlIO.SeqXmlWriter 方法)
write_header() (Bio.AlignIO.Interfaces.SequentialAlignmentWriter 方法)
write_header() (Bio.AlignIO.MafIO.MafWriter 方法)
write_header() (Bio.NMR.xpktools.Peaklist 方法)
write_header() (Bio.SeqIO.Interfaces.SequenceWriter 方法)
write_header() (Bio.SeqIO.Interfaces.SequentialSequenceWriter 方法)
write_header() (Bio.SeqIO.NibIO.NibWriter 方法)
write_header() (Bio.SeqIO.SeqXmlIO.SeqXmlWriter 方法)
write_header() (Bio.SeqIO.SffIO.SffWriter 方法)
write_hie() (Bio.SCOP.Scop 方法)
write_hie_sql() (Bio.SCOP.Scop 方法)
write_nexus_data() (Bio.Nexus.Nexus.Nexus 方法)
write_nexus_data_partitions() (Bio.Nexus.Nexus.Nexus 方法)
write_PDB()(在 Bio.PDB.ic_rebuild 模块中)
write_PIC() (Bio.PDB.internal_coords.IC_Residue 方法)
write_PIC()(在 Bio.PDB.PICIO 模块中)
write_record() (Bio.SeqIO.FastaIO.FastaWriter 方法)
write_record() (Bio.SeqIO.InsdcIO.EmblWriter 方法)
write_record() (Bio.SeqIO.InsdcIO.GenBankWriter 方法)
write_record() (Bio.SeqIO.Interfaces.SequenceWriter 方法)
write_record() (Bio.SeqIO.Interfaces.SequentialSequenceWriter 方法)
write_record() (Bio.SeqIO.NibIO.NibWriter 方法)
write_record() (Bio.SeqIO.PhdIO.PhdWriter 方法)
write_record() (Bio.SeqIO.PirIO.PirWriter 方法)
write_record() (Bio.SeqIO.QualityIO.FastqIlluminaWriter 方法)
write_record() (Bio.SeqIO.QualityIO.FastqPhredWriter 方法)
write_record() (Bio.SeqIO.QualityIO.FastqSolexaWriter 方法)
write_record() (Bio.SeqIO.QualityIO.QualPhredWriter 方法)
write_record() (Bio.SeqIO.SeqXmlIO.SeqXmlWriter 方法)
write_record() (Bio.SeqIO.SffIO.SffWriter 方法)
write_record() (Bio.SeqIO.TabIO.TabWriter 方法)
write_records() (Bio.SeqIO.Interfaces.SequenceWriter 方法)
write_records() (Bio.SeqIO.Interfaces.SequentialSequenceWriter 方法)
write_SCAD() (Bio.PDB.internal_coords.IC_Chain 方法)
write_SCAD()(在 Bio.PDB.SCADIO 模块中)
writeanc(Bio.Align.Applications.PrankCommandline 属性)
writebyproteinrec()(在 Bio.UniProt.GOA 模块中)
writerec()(在 Bio.UniProt.GOA 模块中)
Writer(Bio.Phylo.NewickIO 中的类)
Writer(Bio.Phylo.NeXMLIO 中的类)
Writer(Bio.Phylo.PhyloXMLIO 中的类)
writeToSQL() (Bio.SCOP.Astral 方法)
wr(Bio.Sequencing.Ace 中的类)
w(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
w(Bio.Sequencing.Applications.BwaMemCommandline 属性)
X
XdnaIterator(Bio.SeqIO.XdnaIO 中的类)
XdnaWriter(Bio.SeqIO.XdnaIO 中的类)
xdrop_gap_final(Bio.Blast.Applications.NcbiblastnCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbiblastpCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbiblastxCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbideltablastCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbitblastnCommandline 属性)
xdrop_gap_final(Bio.Blast.Applications.NcbitblastxCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbiblastnCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbiblastpCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbiblastxCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbideltablastCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbitblastnCommandline 属性)
xdrop_gap(Bio.Blast.Applications.NcbitblastxCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbiblastnCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbiblastpCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbiblastxCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbideltablastCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbipsiblastCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbirpsblastCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbirpstblastnCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbitblastnCommandline 属性)
xdrop_ungap(Bio.Blast.Applications.NcbitblastxCommandline 属性)
xfr(Bio.Align.Applications.DialignCommandline 属性)
xGC_skew()(在 Bio.SeqUtils 模块中)
xmlDeclHandler() (Bio.Entrez.Parser.DataHandler 方法)
XMSScanner(Bio.motifs.xms 中的类)
XpkEntry(Bio.NMR.xpktools 中的类)
x(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
Y
Yn00Error
Yn00(Bio.Phylo.PAML.yn00 中的类)
y(Bio.KEGG.KGML.KGML_pathway.Graphics 属性)
Z
z(Bio.Sequencing.Applications.BwaBwaswCommandline 属性)
模
模块
Bio
Bio.Affy
Bio.Affy.CelFile
Bio.Align
Bio.Align.AlignInfo
Bio.Align.Applications
Bio.Align.substitution_matrices
Bio.AlignIO
Bio.AlignIO.ClustalIO
Bio.AlignIO.EmbossIO
Bio.AlignIO.FastaIO
Bio.AlignIO.Interfaces
Bio.AlignIO.MafIO
Bio.AlignIO.MauveIO
Bio.AlignIO.MsfIO
Bio.AlignIO.NexusIO
Bio.AlignIO.PhylipIO
Bio.AlignIO.StockholmIO
Bio.Application
Bio.bgzf
Bio.Blast
Bio.Blast.Applications
Bio.Blast.NCBIWWW
Bio.Blast.NCBIXML
Bio.Blast.ParseBlastTable
Bio.Blast.Record
Bio.CAPS
Bio.Cluster
Bio.codonalign
Bio.codonalign.codonalignment
Bio.codonalign.codonseq
Bio.Compass
Bio.Data
Bio.Data.CodonTable
Bio.Data.IUPACData
Bio.Data.SCOPData
Bio.Emboss
Bio.Emboss.Applications
Bio.Emboss.Primer3
Bio.Emboss.PrimerSearch
Bio.Entrez
Bio.Entrez.Parser
Bio.ExPASy
Bio.ExPASy.cellosaurus
Bio.ExPASy.Enzyme
Bio.ExPASy.Prodoc
Bio.ExPASy.Prosite
Bio.ExPASy.ScanProsite
Bio.File
Bio.GenBank
Bio.GenBank.Record
Bio.GenBank.Scanner
Bio.GenBank.utils
Bio.Geo
Bio.Geo.Record
Bio.HMM
Bio.HMM.DynamicProgramming
Bio.HMM.MarkovModel
Bio.HMM.Trainer
Bio.HMM.Utilities
Bio.KEGG
Bio.KEGG.Compound
Bio.KEGG.Enzyme
Bio.KEGG.Gene
Bio.KEGG.KGML
Bio.KEGG.KGML.KGML_parser
Bio.KEGG.KGML.KGML_pathway
Bio.KEGG.Map
Bio.KEGG.REST
Bio.kNN
Bio.LogisticRegression
Bio.MarkovModel
Bio.MaxEntropy
Bio.Medline
Bio.motifs
Bio.motifs.alignace
Bio.motifs.applications
Bio.motifs.clusterbuster
Bio.motifs.jaspar
Bio.motifs.jaspar.db
Bio.motifs.mast
Bio.motifs.matrix
Bio.motifs.meme
Bio.motifs.minimal
Bio.motifs.pfm
Bio.motifs.thresholds
Bio.motifs.transfac
Bio.motifs.xms
Bio.NaiveBayes
Bio.Nexus
Bio.Nexus.Nexus
Bio.Nexus.Nodes
Bio.Nexus.StandardData
Bio.Nexus.Trees
Bio.NMR
Bio.NMR.NOEtools
Bio.NMR.xpktools
Bio.pairwise2
Bio.Pathway
Bio.Pathway.Rep
Bio.Pathway.Rep.Graph
Bio.Pathway.Rep.MultiGraph
Bio.PDB
Bio.PDB.AbstractPropertyMap
Bio.PDB.Atom
Bio.PDB.Chain
Bio.PDB.Dice
Bio.PDB.DSSP
Bio.PDB.Entity
Bio.PDB.FragmentMapper
Bio.PDB.HSExposure
Bio.PDB.ic_data
Bio.PDB.ic_rebuild
Bio.PDB.internal_coords
Bio.PDB.MMCIF2Dict
Bio.PDB.mmcifio
Bio.PDB.MMCIFParser
Bio.PDB.Model
Bio.PDB.NACCESS
Bio.PDB.NeighborSearch
Bio.PDB.parse_pdb_header
Bio.PDB.PDBExceptions
Bio.PDB.PDBIO
Bio.PDB.PDBList
Bio.PDB.PDBParser
Bio.PDB.PICIO
Bio.PDB.Polypeptide
Bio.PDB.PSEA
Bio.PDB.QCPSuperimposer
Bio.PDB.Residue
Bio.PDB.ResidueDepth
Bio.PDB.SASA
Bio.PDB.SCADIO
Bio.PDB.Selection
Bio.PDB.Structure
Bio.PDB.StructureAlignment
Bio.PDB.StructureBuilder
Bio.PDB.Superimposer
Bio.PDB.vectors
Bio.phenotype
Bio.phenotype.phen_micro
Bio.phenotype.pm_fitting
Bio.Phylo
Bio.Phylo.Applications
Bio.Phylo.BaseTree
Bio.Phylo.CDAO
Bio.Phylo.Consensus
Bio.Phylo.Newick
Bio.Phylo.NewickIO
Bio.Phylo.NeXML
Bio.Phylo.NeXMLIO
Bio.Phylo.NexusIO
Bio.Phylo.PAML
Bio.Phylo.PAML.baseml
Bio.Phylo.PAML.chi2
Bio.Phylo.PAML.codeml
Bio.Phylo.PAML.yn00
Bio.Phylo.PhyloXML
Bio.Phylo.PhyloXMLIO
Bio.Phylo.TreeConstruction
Bio.PopGen
Bio.PopGen.GenePop
Bio.PopGen.GenePop.Controller
Bio.PopGen.GenePop.EasyController
Bio.PopGen.GenePop.FileParser
Bio.PopGen.GenePop.LargeFileParser
Bio.Restriction
Bio.Restriction.PrintFormat
Bio.Restriction.Restriction_Dictionary
Bio.SCOP
Bio.SCOP.Cla
Bio.SCOP.Des
Bio.SCOP.Dom
Bio.SCOP.Hie
Bio.SCOP.Raf
Bio.SCOP.Residues
Bio.SearchIO
Bio.SearchIO.BlastIO
Bio.SearchIO.BlastIO.blast_tab
Bio.SearchIO.BlastIO.blast_text
Bio.SearchIO.BlastIO.blast_xml
Bio.SearchIO.BlatIO
Bio.SearchIO.ExonerateIO
Bio.SearchIO.ExonerateIO.exonerate_cigar
Bio.SearchIO.ExonerateIO.exonerate_text
Bio.SearchIO.ExonerateIO.exonerate_vulgar
Bio.SearchIO.FastaIO
Bio.SearchIO.HHsuiteIO
Bio.SearchIO.HHsuiteIO.hhsuite2_text
Bio.SearchIO.HmmerIO
Bio.SearchIO.HmmerIO.hmmer2_text
Bio.SearchIO.HmmerIO.hmmer3_domtab
Bio.SearchIO.HmmerIO.hmmer3_tab
Bio.SearchIO.HmmerIO.hmmer3_text
Bio.SearchIO.InterproscanIO
Bio.SearchIO.InterproscanIO.interproscan_xml
Bio.Seq
Bio.SeqFeature
Bio.SeqIO
Bio.SeqIO.AbiIO
Bio.SeqIO.AceIO
Bio.SeqIO.FastaIO
Bio.SeqIO.GckIO
Bio.SeqIO.IgIO
Bio.SeqIO.InsdcIO
Bio.SeqIO.Interfaces
Bio.SeqIO.NibIO
Bio.SeqIO.PdbIO
Bio.SeqIO.PhdIO
Bio.SeqIO.PirIO
Bio.SeqIO.QualityIO
Bio.SeqIO.SeqXmlIO
Bio.SeqIO.SffIO
Bio.SeqIO.SnapGeneIO
Bio.SeqIO.SwissIO
Bio.SeqIO.TabIO
Bio.SeqIO.TwoBitIO
Bio.SeqIO.UniprotIO
Bio.SeqIO.XdnaIO
Bio.SeqRecord
Bio.Sequencing
Bio.Sequencing.Ace
Bio.Sequencing.Applications
Bio.Sequencing.Phd
Bio.SeqUtils
Bio.SeqUtils.CheckSum
Bio.SeqUtils.CodonUsage
Bio.SeqUtils.CodonUsageIndices
Bio.SeqUtils.IsoelectricPoint
Bio.SeqUtils.lcc
Bio.SeqUtils.MeltingTemp
Bio.SeqUtils.ProtParam
Bio.SeqUtils.ProtParamData
Bio.SVDSuperimposer
Bio.SwissProt
Bio.SwissProt.KeyWList
Bio.TogoWS
Bio.UniGene
Bio.UniProt
Bio.UniProt.GOA
Bio.Wise
Bio.Wise.dnal
Bio.Wise.psw
BioSQL
BioSQL.BioSeq
BioSQL.BioSeqDatabase
BioSQL.DBUtils
BioSQL.Loader
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