Bio.Phylo包
子包
子模块
- Bio.Phylo. Base Tree模块
TreeElementTreeMixinTreeMixin.find_any()TreeMixin.find_elements()TreeMixin.find_clades()TreeMixin.get_path()TreeMixin.get_nonterminals()TreeMixin.get_terminals()TreeMixin.trace()TreeMixin.common_ancestor()TreeMixin.count_terminals()TreeMixin.depths()TreeMixin.distance()TreeMixin.is_bifurcating()TreeMixin.is_monophyletic()TreeMixin.is_parent_of()TreeMixin.is_preterminal()TreeMixin.total_branch_length()TreeMixin.collapse()TreeMixin.collapse_all()TreeMixin.ladderize()TreeMixin.prune()TreeMixin.split()TreeMixin.__firstlineno__TreeMixin.__static_attributes__
TreeCladeBranchColor
- Bio.Phylo.CDAO模块
- Bio.Phylo.CDAOIO模块
- 生物。phylo。共识模块
- Bio.Phylo. NeML模块
- Bio.Phylo. NeXLIO模块
- Bio.Phylo.Newick模块
- Bio.Phylo.NewickIO模块
- Bio.Phylo.NexusIO模块
- Bio.Phylo. PhyloHTML模块
- Bio.Phylo. PhyloXLIO模块
PhyloXMLErrorread()parse()write()ParserParser.__init__()Parser.read()Parser.parse()Parser.other()Parser.accession()Parser.annotation()Parser.binary_characters()Parser.clade_relation()Parser.color()Parser.confidence()Parser.date()Parser.distribution()Parser.domain()Parser.domain_architecture()Parser.events()Parser.id()Parser.mol_seq()Parser.point()Parser.polygon()Parser.property()Parser.reference()Parser.sequence_relation()Parser.uri()Parser.__firstlineno__Parser.__static_attributes__
WriterWriter.__init__()Writer.write()Writer.phyloxml()Writer.other()Writer.phylogeny()Writer.clade()Writer.accession()Writer.annotation()Writer.binary_characters()Writer.clade_relation()Writer.color()Writer.confidence()Writer.date()Writer.distribution()Writer.domain()Writer.domain_architecture()Writer.events()Writer.id()Writer.mol_seq()Writer.node_id()Writer.point()Writer.polygon()Writer.property()Writer.reference()Writer.sequence()Writer.sequence_relation()Writer.taxonomy()Writer.uri()Writer.alt()Writer.branch_length()Writer.lat()Writer.long()Writer.maximum()Writer.minimum()Writer.value()Writer.width()Writer.blue()Writer.duplications()Writer.green()Writer.losses()Writer.red()Writer.speciations()Writer.bc()Writer.code()Writer.common_name()Writer.desc()Writer.description()Writer.location()Writer.name()Writer.rank()Writer.scientific_name()Writer.symbol()Writer.synonym()Writer.type()Writer.__firstlineno__Writer.__static_attributes__
- Bio.Phylo.TreeConstruction模块
模块内容
用于处理系统发生树的包。